MA_69133g0010


Description : 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. plant U-box 13 (PUB13)


Gene families : OG_01_0000079 (Gene family) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_69133g0010
Cluster HCCA cluster: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AT3G18710 PUB29, ATPUB29 plant U-box 29 0.01 Gene family
AT3G19380 PUB25 plant U-box 25 0.02 Gene family
AT3G52450 PUB22 plant U-box 22 0.02 Gene family
GSVIVT01026542001 No alias 27.3.64 RNA.regulation of transcription.PHOR1 "CYS, MET,... 0.02 Gene family
LOC_Os04g58920 Os04g0686000 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
LOC_Os12g06410 Os12g0161100 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10432179g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
MA_10432813g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.01 Gene family
MA_311559g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.03 Gene family
MA_9494855g0010 No alias 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.01 Gene family
Smo416356 PACid_15422407 No description available 0.02 Gene family
Solyc01g107980.3.1 Solyc01g107980.3 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.02 Gene family
Solyc06g074140.1.1 Solyc06g074140.1 27.3.64 RNA.regulation of transcription.PHOR1 Encodes a... 0.02 Gene family
Zm00001d003624 GRMZM2G361100 27.3.64 RNA.regulation of transcription.PHOR1 plant... 0.01 Gene family
Zm00001d023480 GRMZM2G031624 35.1 not assigned.no ontology TTF-type zinc finger... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA InterProScan
BP GO:0016567 protein ubiquitination IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000225 Armadillo 299 332
IPR000225 Armadillo 133 172
IPR000225 Armadillo 258 295
IPR000225 Armadillo 216 254
IPR003613 Ubox_domain 9 78
No external refs found!