AMTR_s00041p00236190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.293

Description : Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana


Gene families : OG_01_0015462 (Archaeplastida) Phylogenetic Tree(s): OG_01_0015462_tree ,
OG_02_0015310 (LandPlants) Phylogenetic Tree(s): OG_02_0015310_tree ,
OG_03_0015003 (SeedPlants) Phylogenetic Tree(s): OG_03_0015003_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00236190
Cluster HCCA: Cluster_20

Target Alias Description ECC score Gene Family Method Actions
LOC_Os03g10420.1 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 Archaeplastida
Zm00001e000760_P001 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.02 Archaeplastida
LOC_Os03g10420.1 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.03 LandPlants
LOC_Os03g10420.1 No alias Pentatricopeptide repeat-containing protein At2g16880... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 252 276
IPR002885 Pentatricopeptide_repeat 9 58
IPR002885 Pentatricopeptide_repeat 147 194
IPR002885 Pentatricopeptide_repeat 109 138
No external refs found!