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  5. Als_g42235

Als_g42235 (SR34b, At-SR34b)


Aliases : SR34b, At-SR34b

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g42235

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00100p00047650 At-SR34a, SR34a,... RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Als_g12032 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000857.20 At-SR34, SRP34,... RNA processing.RNA splicing.spliceosome-associated... 0.01 OrthoFinder output from all 47 species
Gb_24206 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Lfl_g02704 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0005544 calcium-dependent phospholipid binding IEP HCCA
CC GO:0005839 proteasome core complex IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 75
IPR000504 RRM_dom 112 163
No external refs found!