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  5. Als_g39841

Als_g39841 (CDC48A, CDC48, ATCDC48)


Aliases : CDC48A, CDC48, ATCDC48

Description : not classified & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g39841
Cluster HCCA: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
AT5G03340 No alias ATPase, AAA-type, CDC48 protein 0.02 OrthoFinder output from all 47 species
LOC_Os08g31870.1 LOC_Os08g31870 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Solyc03g112590.4.1 Solyc03g112590 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species
Spa_g53868 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e025331_P002 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004356 glutamate-ammonia ligase activity IEP HCCA
MF GO:0004743 pyruvate kinase activity IEP HCCA
BP GO:0006090 pyruvate metabolic process IEP HCCA
BP GO:0006096 glycolytic process IEP HCCA
BP GO:0006165 nucleoside diphosphate phosphorylation IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006757 ATP generation from ADP IEP HCCA
BP GO:0009132 nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009135 purine nucleoside diphosphate metabolic process IEP HCCA
BP GO:0009179 purine ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0009185 ribonucleoside diphosphate metabolic process IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010167 response to nitrate IEP HCCA
BP GO:0015698 inorganic anion transport IEP HCCA
BP GO:0015706 nitrate transmembrane transport IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016211 ammonia ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0030955 potassium ion binding IEP HCCA
MF GO:0031420 alkali metal ion binding IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0046031 ADP metabolic process IEP HCCA
BP GO:0046939 nucleotide phosphorylation IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098661 inorganic anion transmembrane transport IEP HCCA
BP GO:1901698 response to nitrogen compound IEP HCCA
BP GO:1901700 response to oxygen-containing compound IEP HCCA
BP GO:1902025 nitrate import IEP HCCA
InterPro domains Description Start Stop
IPR041569 AAA_lid_3 30 70
IPR015415 Vps4_C 81 121
No external refs found!