1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g38557

Als_g38557


Description : not classified & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g38557
Cluster HCCA: Cluster_101

Target Alias Description ECC score Gene Family Method Actions
AT3G53230 No alias ATPase, AAA-type, CDC48 protein 0.02 OrthoFinder output from all 47 species
Adi_g080378 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g23788 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07440 No alias platform ATPase CDC48 & original description: none 0.01 OrthoFinder output from all 47 species
Als_g35911 emb1354, CDC48C not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g38163 CDC48A, CDC48, ATCDC48 platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g05302 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g16600 emb1354, CDC48C platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g38164 CDC48A, CDC48, ATCDC48 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g32745 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g36367 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40907 CDC48B platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g16719 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g112590.4.1 Solyc03g112590 platform ATPase (CDC48) 0.03 OrthoFinder output from all 47 species
Solyc06g074980.3.1 Solyc06g074980 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005789 endoplasmic reticulum membrane IEP HCCA
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP HCCA
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
MF GO:0051213 dioxygenase activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 237 363
IPR003338 CDC4_N-term_subdom 22 103
IPR004201 Cdc48_dom2 124 186
No external refs found!