Als_g38163 (CDC48A, CDC48, ATCDC48)

Aliases : CDC48A, CDC48, ATCDC48

Description : platform ATPase CDC48 & original description: none

Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g38163
Cluster	HCCA: Cluster_129

Target	Alias	Description	ECC score	Gene Family Method
Adi_g035605	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Als_g38557	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dac_g04710	No alias	platform ATPase CDC48 & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g03992	emb1354, CDC48C	platform ATPase CDC48 & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g13016	CIP111	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g34787	CDC48A, CDC48, ATCDC48	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Tin_g28061	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e012761_P001	Zm00001e012761	platform ATPase (CDC48)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATP hydrolysis activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0030246	carbohydrate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004201	Cdc48_dom2	82	144
IPR003959	ATPase_AAA_core	195	324
IPR003959	ATPase_AAA_core	468	601
IPR003338	CDC4_N-term_subdom	1	61
IPR041569	AAA_lid_3	623	664
IPR041569	AAA_lid_3	347	389

External Links

No external refs found!