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  5. Als_g37611

Als_g37611 (PAB8, PABP8)


Aliases : PAB8, PABP8

Description : mRNA poly-A-tail binding factor *(PABP) & original description: none


Gene families : OG0000326 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000326_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g37611
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
Adi_g023674 PAB8, PABP8 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene65834.t1 PAB8, PABP8,... mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0060.g034731 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Cba_g27225 PAB8, PABP8 mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Cre01.g039300 PAB8, PABP8 Protein biosynthesis.translation initiation.mRNA... 0.01 OrthoFinder output from all 47 species
Pir_g54838 PAB2, PABP2, ATPAB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g10177 No alias mRNA poly-A-tail binding factor *(PABP) & original... 0.02 OrthoFinder output from all 47 species
Spa_g26046 PAB2, PABP2, ATPAB2 mRNA poly-A-tail binding factor *(PABP) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006465 signal peptide processing IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008236 serine-type peptidase activity IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0017171 serine hydrolase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002004 PABP_HYD 555 619
IPR000504 RRM_dom 206 274
IPR000504 RRM_dom 309 377
IPR000504 RRM_dom 27 96
IPR000504 RRM_dom 115 183
No external refs found!