1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g37353

Als_g37353 (GAMMA-H2AX, H2AXB,...)


Aliases : GAMMA-H2AX, H2AXB, HTA3, G-H2AX

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g37353
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00168p00048800 HTA12,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Als_g04736 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Als_g44974 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene13890.t1 HTA6, Aspi01Gene13890 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g01911 HTA6 histone *(H2A) & original description: none 0.01 OrthoFinder output from all 47 species
Pnu_g25727 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g005220.4.1 GAMMA-H2AX,... histone (H2A) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004017 adenylate kinase activity IEP HCCA
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP HCCA
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP HCCA
CC GO:0005747 mitochondrial respiratory chain complex I IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006006 glucose metabolic process IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006094 gluconeogenesis IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
MF GO:0016831 carboxy-lyase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
BP GO:0019319 hexose biosynthetic process IEP HCCA
BP GO:0022900 electron transport chain IEP HCCA
BP GO:0022904 respiratory electron transport chain IEP HCCA
CC GO:0030964 NADH dehydrogenase complex IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
CC GO:0045271 respiratory chain complex I IEP HCCA
BP GO:0046364 monosaccharide biosynthetic process IEP HCCA
MF GO:0050145 nucleoside monophosphate kinase activity IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
CC GO:1902495 transmembrane transporter complex IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
CC GO:1990351 transporter complex IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 91 124
IPR007125 Histone_H2A/H2B/H3 8 88
No external refs found!