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  5. Pnu_g13823

Pnu_g13823


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g13823

Target Alias Description ECC score Gene Family Method Actions
AT1G27595 No alias CONTAINS InterPro DOMAIN/s: Symplekin tight junction... 0.02 OrthoFinder output from all 47 species
Adi_g081403 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g08267 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Dde_g21527 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ehy_g21797 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Len_g19439 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
MA_10430259g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
MA_34105g0010 ESP4 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Msp_g24896 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g27266 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Sam_g08972 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Solyc04g076900.2.1 Solyc04g076900 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.02 OrthoFinder output from all 47 species
Solyc04g076910.3.1 Solyc04g076910 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004474 malate synthase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006081 cellular aldehyde metabolic process IEP HCCA
BP GO:0006097 glyoxylate cycle IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0019627 urea metabolic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0032787 monocarboxylic acid metabolic process IEP HCCA
CC GO:0035550 urease complex IEP HCCA
BP GO:0043419 urea catabolic process IEP HCCA
BP GO:0043605 amide catabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044281 small molecule metabolic process IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0046487 glyoxylate metabolic process IEP HCCA
MF GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
BP GO:1901565 organonitrogen compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 113 331
IPR022075 Symplekin_C 1140 1318
No external refs found!