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  5. Als_g33647

Als_g33647 (PAP(IV), nPAP)


Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none


Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Als_g33647
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
AT2G25850 PAPS2 poly(A) polymerase 2 0.03 OrthoFinder output from all 47 species
AT4G32850 PAP(IV), nPAP nuclear poly(a) polymerase 0.05 OrthoFinder output from all 47 species
Adi_g055927 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102292 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g107106 PAPS1 poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30704 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g06963 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene01167.t1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0102.g044509 PAP(IV), nPAP poly(A) RNA polymerase & original description: CDS=1-2214 0.03 OrthoFinder output from all 47 species
Ceric.22G023600.1 PAP(IV), nPAP,... poly(A) RNA polymerase & original description:... 0.03 OrthoFinder output from all 47 species
Cre10.g433750 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.01 OrthoFinder output from all 47 species
Dcu_g13917 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01008352001 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.09 OrthoFinder output from all 47 species
GSVIVT01016969001 PAP(IV), nPAP RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
LOC_Os02g13400.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
LOC_Os06g21470.1 PAPS1, LOC_Os06g21470 poly(A) RNA polymerase 0.05 OrthoFinder output from all 47 species
LOC_Os06g36360.2 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Lfl_g10052 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.06 OrthoFinder output from all 47 species
MA_100058g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
MA_136671g0010 PAP(IV), nPAP poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Mp7g10140.1 PAPS1 poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Ore_g44221 PAPS1 poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g08646 PAP(IV), nPAP poly(A) RNA polymerase & original description: none 0.02 OrthoFinder output from all 47 species
Smo169728 PAPS1 RNA processing.RNA 3-end polyadenylation.poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species
Solyc08g066200.3.1 PAP(IV), nPAP,... poly(A) RNA polymerase 0.06 OrthoFinder output from all 47 species
Zm00001e024922_P001 PAP(IV), nPAP,... poly(A) RNA polymerase 0.03 OrthoFinder output from all 47 species
Zm00001e030659_P006 PAP(IV), nPAP,... poly(A) RNA polymerase 0.04 OrthoFinder output from all 47 species
Zm00001e037202_P005 PAP(IV), nPAP,... poly(A) RNA polymerase 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004652 polynucleotide adenylyltransferase activity IEA Interproscan
BP GO:0043631 RNA polyadenylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
MF GO:0008233 peptidase activity IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
CC GO:0030119 AP-type membrane coat adaptor complex IEP HCCA
CC GO:0030131 clathrin adaptor complex IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
InterPro domains Description Start Stop
IPR002934 Polymerase_NTP_transf_dom 79 164
IPR007010 PolA_pol_RNA-bd_dom 415 488
IPR007010 PolA_pol_RNA-bd_dom 358 414
IPR007012 PolA_pol_cen_dom 11 354
No external refs found!