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  5. Als_g32831

Als_g32831 (RACK1B_AT)


Aliases : RACK1B_AT

Description : component *(RACK1) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0002231 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002231_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g32831

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 RACK1B_AT,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.08 OrthoFinder output from all 47 species
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.12 OrthoFinder output from all 47 species
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.04 OrthoFinder output from all 47 species
AT3G18130 RACK1C_AT receptor for activated C kinase 1C 0.05 OrthoFinder output from all 47 species
Adi_g098685 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g06871 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0113.g045894 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.02G088700.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Ceric.34G016800.1 RACK1C_AT,... component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000169.6 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Cre06.g278222 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
GSVIVT01008395001 MYB4R1, AtMYB4R1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os01g49290.1 RACK1C_AT, LOC_Os01g49290 associated component RACK1 of SSU proteome 0.07 OrthoFinder output from all 47 species
LOC_Os05g47890.1 RACK1C_AT, LOC_Os05g47890 associated component RACK1 of SSU proteome 0.05 OrthoFinder output from all 47 species
Lfl_g05286 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
MA_10435947g0010 RACK1B_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder output from all 47 species
Mp3g15630.1 RACK1C_AT associated component RACK1 of SSU proteome 0.07 OrthoFinder output from all 47 species
Msp_g08733 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Nbi_g06103 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Sam_g19034 No alias component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g19035 No alias component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Smo266532 RACK1C_AT Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
Solyc03g119040.3.1 RACK1B_AT, Solyc03g119040 associated component RACK1 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc06g069010.3.1 RACK1B_AT, Solyc06g069010 associated component RACK1 of SSU proteome 0.05 OrthoFinder output from all 47 species
Spa_g01709 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Spa_g16013 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g25398 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g25399 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g04974 RACK1C_AT component *(RACK1) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Zm00001e026456_P001 RACK1C_AT, Zm00001e026456 associated component RACK1 of SSU proteome 0.07 OrthoFinder output from all 47 species
Zm00001e032340_P001 RACK1C_AT, Zm00001e032340 associated component RACK1 of SSU proteome 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 96 132
IPR001680 WD40_repeat 56 90
IPR001680 WD40_repeat 234 260
IPR001680 WD40_repeat 139 178
IPR001680 WD40_repeat 285 311
IPR001680 WD40_repeat 186 220
IPR001680 WD40_repeat 9 44
No external refs found!