AMTR_s00041p00198410 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00041.176

Description : Putative E3 ubiquitin-protein ligase LIN-2 OS=Lotus japonicus


Gene families : OG_01_0001418 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001418_tree ,
OG_02_0001365 (LandPlants) Phylogenetic Tree(s): OG_02_0001365_tree ,
OG_03_0037573 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00041p00198410
Cluster HCCA: Cluster_188

Target Alias Description ECC score Gene Family Method Actions
MA_126120g0010 No alias Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.04 Archaeplastida
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 Archaeplastida
MA_126120g0010 No alias Putative E3 ubiquitin-protein ligase LIN OS=Medicago... 0.04 LandPlants
MA_87817g0010 No alias Putative E3 ubiquitin-protein ligase LIN-1 OS=Lotus... 0.03 LandPlants

Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEA Interproscan
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003613 Ubox_domain 233 303
No external refs found!