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  5. Als_g31957

Als_g31957


Description : not classified & original description: none


Gene families : OG0000142 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g31957

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00238660 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g20300,... 0.03 OrthoFinder output from all 47 species
AMTR_s00033p00156340 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g80550,... 0.03 OrthoFinder output from all 47 species
AMTR_s00119p00029960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g15010,... 0.03 OrthoFinder output from all 47 species
AT1G74900 OTP43 Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g012989 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057448 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057762 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g058761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22080 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g54972 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00769 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Aop_g31482 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007736 No alias not classified & original description: CDS=1-1782 0.04 OrthoFinder output from all 47 species
Cba_g02658 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g24502 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Cba_g36532 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g58922 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g78360 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.03G098700.1 Ceric.03G098700 not classified & original description: pacid=50572397... 0.04 OrthoFinder output from all 47 species
Ceric.24G045100.1 Ceric.24G045100 not classified & original description: pacid=50628969... 0.03 OrthoFinder output from all 47 species
Dac_g07022 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g07047 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g10060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g11222 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g27861 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01694 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g03049 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g04814 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g02250 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    • Dde_g50968 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    GSVIVT01008815001 No alias Pentatricopeptide repeat-containing protein At1g77360,... 0.02 OrthoFinder output from all 47 species
    GSVIVT01010329001 No alias Pentatricopeptide repeat-containing protein At3g04130,... 0.02 OrthoFinder output from all 47 species
    GSVIVT01014289001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species
    GSVIVT01015982001 No alias Pentatricopeptide repeat-containing protein At1g80880,... 0.02 OrthoFinder output from all 47 species
    GSVIVT01017111001 No alias Pentatricopeptide repeat-containing protein At3g16010... 0.02 OrthoFinder output from all 47 species
    GSVIVT01017293001 No alias Pentatricopeptide repeat-containing protein At1g52640,... 0.04 OrthoFinder output from all 47 species
    GSVIVT01027388001 No alias Pentatricopeptide repeat-containing protein At1g80550,... 0.02 OrthoFinder output from all 47 species
    LOC_Os01g05860.1 LOC_Os01g05860 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
    LOC_Os02g20160.1 LOC_Os02g20160 Putative pentatricopeptide repeat-containing protein... 0.02 OrthoFinder output from all 47 species
    LOC_Os02g52220.1 LOC_Os02g52220 Pentatricopeptide repeat-containing protein At1g73400,... 0.02 OrthoFinder output from all 47 species
    LOC_Os03g53490.1 LOC_Os03g53490 Pentatricopeptide repeat-containing protein At3g22670,... 0.02 OrthoFinder output from all 47 species
    Lfl_g02336 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Lfl_g06036 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Lfl_g06707 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g07415 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Lfl_g11461 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Lfl_g28170 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    MA_12748g0020 No alias Pentatricopeptide repeat-containing protein At1g79540... 0.02 OrthoFinder output from all 47 species
    MA_355286g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
    MA_8206159g0010 No alias Pentatricopeptide repeat-containing protein At5g15010,... 0.02 OrthoFinder output from all 47 species
    Mp4g20290.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.03 OrthoFinder output from all 47 species
    Msp_g27283 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Nbi_g01378 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
    Sam_g14954 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Sam_g24475 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Solyc04g081950.4.1 Solyc04g081950 Pentatricopeptide repeat-containing protein At1g20300,... 0.04 OrthoFinder output from all 47 species
    Spa_g10895 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Spa_g12536 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Tin_g10641 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Tin_g21176 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
    Zm00001e005446_P003 Zm00001e005446 group-II intron mitochondrial splicing factor (MISF68) 0.02 OrthoFinder output from all 47 species
    Zm00001e036197_P001 Zm00001e036197 Pentatricopeptide repeat-containing protein At1g71060,... 0.02 OrthoFinder output from all 47 species

    Type GO Term Name Evidence Source

    No GO annotation available for this sequence
    Toggle parental
    Type GO Term Name Evidence Source
    MF GO:0000287 magnesium ion binding IEP HCCA
    BP GO:0006166 purine ribonucleoside salvage IEP HCCA
    BP GO:0006190 inosine salvage IEP HCCA
    MF GO:0008252 nucleotidase activity IEP HCCA
    MF GO:0008253 5'-nucleotidase activity IEP HCCA
    MF GO:0008270 zinc ion binding IEP HCCA
    BP GO:0009116 nucleoside metabolic process IEP HCCA
    BP GO:0009119 ribonucleoside metabolic process IEP HCCA
    BP GO:0009163 nucleoside biosynthetic process IEP HCCA
    MF GO:0016791 phosphatase activity IEP HCCA
    BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP HCCA
    BP GO:0042278 purine nucleoside metabolic process IEP HCCA
    BP GO:0042451 purine nucleoside biosynthetic process IEP HCCA
    BP GO:0042455 ribonucleoside biosynthetic process IEP HCCA
    MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
    BP GO:0043094 cellular metabolic compound salvage IEP HCCA
    BP GO:0043101 purine-containing compound salvage IEP HCCA
    MF GO:0043167 ion binding IEP HCCA
    MF GO:0043169 cation binding IEP HCCA
    BP GO:0043174 nucleoside salvage IEP HCCA
    BP GO:0046102 inosine metabolic process IEP HCCA
    BP GO:0046103 inosine biosynthetic process IEP HCCA
    BP GO:0046128 purine ribonucleoside metabolic process IEP HCCA
    BP GO:0046129 purine ribonucleoside biosynthetic process IEP HCCA
    MF GO:0046872 metal ion binding IEP HCCA
    MF GO:0046914 transition metal ion binding IEP HCCA
    MF GO:0050483 IMP 5'-nucleotidase activity IEP HCCA
    MF GO:0051536 iron-sulfur cluster binding IEP HCCA
    MF GO:0051540 metal cluster binding IEP HCCA
    BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
    BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
    BP GO:1901657 glycosyl compound metabolic process IEP HCCA
    BP GO:1901659 glycosyl compound biosynthetic process IEP HCCA
    InterPro domains Description Start Stop
    IPR002885 Pentatricopeptide_repeat 456 488
    IPR002885 Pentatricopeptide_repeat 667 699
    IPR002885 Pentatricopeptide_repeat 247 278
    IPR002885 Pentatricopeptide_repeat 360 388
    IPR002885 Pentatricopeptide_repeat 184 208
    IPR002885 Pentatricopeptide_repeat 531 579
    IPR002885 Pentatricopeptide_repeat 601 647
    IPR002885 Pentatricopeptide_repeat 288 334
    IPR002885 Pentatricopeptide_repeat 705 754
    IPR002885 Pentatricopeptide_repeat 390 437
    No external refs found!