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  5. Als_g28227

Als_g28227


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g28227

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00094950 UBQ6,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder output from all 47 species
AT1G23410 No alias Ribosomal protein S27a / Ubiquitin family protein 0.04 OrthoFinder output from all 47 species
AT2G36170 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 OrthoFinder output from all 47 species
AT2G47110 UBQ6 ubiquitin 6 0.04 OrthoFinder output from all 47 species
AT3G52590 UBQ1, EMB2167,... ubiquitin extension protein 1 0.05 OrthoFinder output from all 47 species
AT3G62250 UBQ5 ubiquitin 5 0.07 OrthoFinder output from all 47 species
Ala_g22856 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g30723 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Aop_g64104 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.21G057000.1 UBQ6, Ceric.21G057000 component *(eS31) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Ceric.21G057400.1 UBQ6, Ceric.21G057400 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.22G050200.1 UBQ6, Ceric.22G050200 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ceric.27G040600.1 Ceric.27G040600 component *(eL40) of large ribosomal-subunit (LSU)... 0.05 OrthoFinder output from all 47 species
Ceric.29G038100.1 UBQ11, Ceric.29G038100 not classified & original description: pacid=50625725... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00022075.50 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
Cre01.g007051 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder output from all 47 species
Cre06.g273600 UBQ6 Protein biosynthesis.cytosolic ribosome.small subunit... 0.07 OrthoFinder output from all 47 species
Dac_g08496 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Dac_g43673 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g46245 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Dde_g39498 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01012906001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
GSVIVT01022543001 No alias Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum 0.04 OrthoFinder output from all 47 species
GSVIVT01028198001 No alias Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
GSVIVT01033876001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.04 OrthoFinder output from all 47 species
GSVIVT01038617001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.06 OrthoFinder output from all 47 species
Gb_15027 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Gb_35975 UBQ3 ubiquitin-fold protein (UBQ) 0.03 OrthoFinder output from all 47 species
Gb_40288 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Gb_41257 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
LOC_Os05g06770.1 UBQ6, LOC_Os05g06770 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
LOC_Os09g39500.1 LOC_Os09g39500 component RPL40 of LSU proteome component 0.05 OrthoFinder output from all 47 species
LOC_Os10g34990.1 LOC_Os10g34990 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Len_g14648 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Len_g27536 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.03 OrthoFinder output from all 47 species
MA_10435699g0020 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_13121g0010 UBQ11 ubiquitin-fold protein (UBQ) 0.02 OrthoFinder output from all 47 species
MA_529552g0010 UBQ6 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
MA_9129425g0010 No alias component RPL40 of LSU proteome component 0.03 OrthoFinder output from all 47 species
MA_93495g0010 UBQ4 ubiquitin-fold protein (UBQ) 0.03 OrthoFinder output from all 47 species
Mp7g12760.1 UBQ6 component RPS27a of SSU proteome 0.04 OrthoFinder output from all 47 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Msp_g06697 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g34986 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Msp_g38968 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Pp3c10_25270V3.1 Pp3c10_25270 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c12_5640V3.1 UBQ6, Pp3c12_5640 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Pp3c12_5760V3.1 UBQ6, Pp3c12_5760 ubiquitin 6 0.01 OrthoFinder output from all 47 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c24_430V3.1 Pp3c24_430 ubiquitin extension protein 1 0.02 OrthoFinder output from all 47 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.03 OrthoFinder output from all 47 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.02 OrthoFinder output from all 47 species
Sam_g07359 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g07360 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g07364 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Sam_g20114 No alias component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Sam_g26881 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Solyc01g068045.1.1 UBQ6, Solyc01g068045 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc03g082570.4.1 Solyc03g082570 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Solyc12g098940.2.1 UBQ6, Solyc12g098940 component RPS27a of SSU proteome 0.03 OrthoFinder output from all 47 species
Spa_g02055 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g29603 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g29979 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.03 OrthoFinder output from all 47 species
Spa_g56402 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Tin_g03631 UBQ6 component *(eS31) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Zm00001e000962_P001 Zm00001e000962 component RPL40 of LSU proteome component 0.04 OrthoFinder output from all 47 species
Zm00001e000965_P001 Zm00001e000965 component RPL40 of LSU proteome component 0.05 OrthoFinder output from all 47 species
Zm00001e026237_P001 UBQ6, Zm00001e026237 component RPS27a of SSU proteome 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 117
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!