Als_g27084 (ATPUB45, PUB45)

Aliases : ATPUB45, PUB45

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0002832 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002832_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g27084

Target	Alias	Description	ECC score	Gene Family Method
AT1G27910	ATPUB45, PUB45	plant U-box 45	0.03	OrthoFinder output from all 47 species
Aev_g27546	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g62287	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene72640.t1	ATPUB45, PUB45,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g43192	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.08G047000.1	ATPUB45, PUB45,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g07545	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g03968	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01010374001	No alias	U-box domain-containing protein 6 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Len_g15193	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.05	OrthoFinder output from all 47 species
Lfl_g04138	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
MA_100380g0010	ATPUB45, PUB45	U-box domain-containing protein 6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Ppi_g02310	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.07	OrthoFinder output from all 47 species
Sam_g16169	No alias	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g12629	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g30427	ATPUB45, PUB45	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e007747_P003	ATPUB45, PUB45,...	U-box domain-containing protein 6 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Zm00001e041111_P003	ATPUB45, PUB45,...	U-box domain-containing protein 7 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0003849	3-deoxy-7-phosphoheptulonate synthase activity	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
BP	GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007018	microtubule-based movement	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
MF	GO:0008171	O-methyltransferase activity	IEP	HCCA
BP	GO:0009072	aromatic amino acid metabolic process	IEP	HCCA
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	566	604
IPR003613	Ubox_domain	285	355

External Links

No external refs found!

Als_g27084 (ATPUB45, PUB45)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation