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  5. Als_g27000

Als_g27000 (SMC5)


Aliases : SMC5

Description : component *(SMC5) of homologous recombination repair Smc5-Smc6 complex & original description: none


Gene families : OG0004405 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004405_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g27000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00247730 SMC5,... DNA damage response.DNA repair mechanisms.homologous... 0.03 OrthoFinder output from all 47 species
Ceric.21G036900.1 SMC5, Ceric.21G036900 component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Cre10.g440200 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
Cre10.g440300 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.02 OrthoFinder output from all 47 species
GSVIVT01032195001 SMC5 DNA damage response.DNA repair mechanisms.homologous... 0.06 OrthoFinder output from all 47 species
Len_g16986 SMC5 component *(SMC5) of homologous recombination repair... 0.03 OrthoFinder output from all 47 species
Lfl_g02324 SMC5 component *(SMC5) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
MA_10432022g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.04 OrthoFinder output from all 47 species
MA_114320g0010 SMC5 Structural maintenance of chromosomes protein 5... 0.03 OrthoFinder output from all 47 species
Pir_g39085 SMC5 component *(SMC5) of homologous recombination repair... 0.04 OrthoFinder output from all 47 species
Sam_g40490 No alias component *(SMC5) of homologous recombination repair... 0.06 OrthoFinder output from all 47 species
Zm00001e013059_P001 SMC5, Zm00001e013059 component SMC5 of homologous recombination repair... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005667 transcription regulator complex IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 90 1057
No external refs found!