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  5. Als_g26974

Als_g26974


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation & original description: none


Gene families : OG0000531 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000531_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g26974

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00022p00247520 evm_27.TU.AmTr_v1... Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT3G19130 ATRBP47B, RBP47B RNA-binding protein 47B 0.03 OrthoFinder output from all 47 species
AT4G27000 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 OrthoFinder output from all 47 species
Aev_g09512 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Als_g21030 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Azfi_s0022.g016117 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ceric.30G047300.1 ATRBP47B,... regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g06811 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Ehy_g21098 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
GSVIVT01031780001 ATRBP47B, RBP47B Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia 0.04 OrthoFinder output from all 47 species
GSVIVT01037635001 ATRBP45C Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
LOC_Os07g33330.1 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Len_g17526 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Len_g22426 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Lfl_g33868 ATRBP45C regulatory factor *(RBP45/47) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Mp8g07840.1 No alias mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Nbi_g09272 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Pir_g17296 ATRBP47B, RBP47B regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pir_g18156 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Pp3c12_10910V3.1 Pp3c12_10910 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Pp3c12_10960V3.1 Pp3c12_10960 RNA-binding (RRM/RBD/RNP motifs) family protein 0.01 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021456 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026897 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Solyc01g108500.4.1 ATRBP47B,... mRNA-binding regulatory factor (RBP45/47) 0.06 OrthoFinder output from all 47 species
Solyc03g031720.3.1 ATRBP45C, Solyc03g031720 mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Solyc10g005260.3.1 RBP45B,... mRNA-binding regulatory factor (RBP45/47) 0.02 OrthoFinder output from all 47 species
Tin_g11427 No alias regulatory factor *(RBP45/47) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Zm00001e000547_P001 Zm00001e000547 mRNA-binding regulatory factor (RBP45/47) 0.03 OrthoFinder output from all 47 species
Zm00001e010479_P003 ATRBP45A,... mRNA-binding regulatory factor (RBP45/47) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0043167 ion binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 172 241
IPR000504 RRM_dom 78 146
IPR000504 RRM_dom 286 349
No external refs found!