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  5. Als_g25949

Als_g25949 (ATSIG1, SIGB, ATSIG2,...)


Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1

Description : basal Sigma-type transcription factor & original description: none


Gene families : OG0000565 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000565_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g25949

Target Alias Description ECC score Gene Family Method Actions
Ppi_g07492 SIGB, SIG2,... basal Sigma-type transcription factor & original... 0.03 OrthoFinder output from all 47 species
Solyc03g097330.1.1 Solyc03g097330 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription initiation IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 334 402
IPR007624 RNA_pol_sigma70_r3 416 487
IPR007630 RNA_pol_sigma70_r4 503 555
No external refs found!