Cpa|evm.model.tig00001299.2


Description : 29.2.1.2.1.27 protein.synthesis.ribosomal protein.eukaryotic.40S subunit.S27 Zinc-binding ribosomal protein family protein


Gene families : OG_01_0001236 (Gene family) Phylogenetic Tree(s): OG0001236_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


<h3 class="banner-blue" id="coexpression_networks">Co-expression Networks</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="coexpression_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><abbr title="Click to show help" href="/help/neighborhood" data-target="#helpModal">Neighborhood</abbr></td> <td>HRR network (cutoff 100): <strong>Cpa|evm.model.tig00001299.2</strong></td> <td><a href="/network/download/neighbors/45126" data-toggle="tooltip" data-placement="top" title="Download direct neighbors" download="neighbors_45126.txt"><i class="fa fa-list"></i></span> <a href="/network/graph/45126" data-toggle="tooltip" data-placement="top" title="View neighborhood as graph"><i class="fa fa-sitemap"></i></a> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-area-chart"></i></span> <span class="text-muted" data-toggle="tooltip" data-placement="top" title="Disabled for neighborhoods"><i class="fa fa-table"></i></span></td> </tr> <tr> <td><abbr title="Click to show help" href="/help/cluster" data-target="#helpModal">Cluster</abbr></td> <td>HCCA cluster: <strong><a href="/cluster/view/787" class="qtip_tooltip" qtip_href="/cluster/tooltip/787">Cluster_43</a></strong></td> <td><a href="/cluster/view/787" data-toggle="tooltip" data-placement="top" title="View cluster as table"><i class="fa fa-list"></i></a> <a href="/cluster/graph/787" data-toggle="tooltip" data-placement="top" title="View cluster as graph"><i class="fa fa-sitemap"></i></a> <a href="/profile_comparison/cluster/787" data-toggle="tooltip" data-placement="top" title="Compare profiles in this cluster"><i class="fa fa-area-chart"></i></a> <a href="/heatmap/cluster/787" data-toggle="tooltip" data-placement="top" title="Heatmap of profiles in this cluster"><i class="fa fa-table"></i></a></td> </tr> </tbody> </table> </div> </div> <br> <h3 class="banner-blue" id="expression_conservation">Expression Context Conservation (<abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr>)</h3> <div class="table-responsive"> <table class="table table-striped table-separated" id="ecc_hits_table"> <thead> <tr> <th data-sort="string-ins"><span class="sort-icon"></span>Target</th> <th data-sort="string-ins"><span class="sort-icon"></span>Alias</th> <th data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th data-sort="float"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/ecc" data-target="#helpModal">ECC</abbr> score</th> <th data-sort="string-ins"><span class="sort-icon"></span>Gene Family Method</th> <th>Actions</th> </tr> </thead> <tbody> <tr> <td><a href="/sequence/view/292532" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/292532">AT3G61110</a></td> <td>ARS27A, RS27A</td> <td>ribosomal protein S27</td> <td>0.12</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612664" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/301111" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/301111">AT5G47930</a></td> <td><span class="text-muted">No alias</span></td> <td>Zinc-binding ribosomal protein family protein</td> <td>0.11</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612690" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/37287" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/37287">Cre12.g529400</a></td> <td><span class="text-muted">No alias</span></td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.11</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612717" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/250469" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/250469">GSVIVT01001113001</a></td> <td><span class="text-muted">No alias</span></td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.09</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612719" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/271901" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/271901">GSVIVT01032964001</a></td> <td><span class="text-muted">No alias</span></td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.08</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612721" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/142865" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/142865">LOC_Os02g27769</a></td> <td>Os02g0478700</td> <td>No description available</td> <td>0.05</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612723" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/150887" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/150887">LOC_Os04g27860</a></td> <td>Os04g0346100</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.05</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612725" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/151203" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/151203">LOC_Os04g32710</a></td> <td>Os04g0399000</td> <td>No description available</td> <td>0.04</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612727" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/46213" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/46213">Smo163947</a></td> <td>PACid_15411468</td> <td>No description available</td> <td>0.08</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612729" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/215960" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/215960">Solyc01g008090.3.1</a></td> <td>Solyc01g008090.3</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.04</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612731" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/233892" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/233892">Solyc06g068710.3.1</a></td> <td>Solyc06g068710.3</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.04</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612733" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/184828" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/184828">Zm00001d013282</a></td> <td>GRMZM2G132121</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.1</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612735" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/187194" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/187194">Zm00001d016491</a></td> <td>GRMZM2G377600</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.04</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612737" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> <tr> <td><a href="/sequence/view/214208" class="qtip_tooltip qtip_dynamic_tooltip" qtip_href="/sequence/tooltip/214208">Zm00001d053239</a></td> <td>GRMZM2G066222</td> <td>29.2.1.2.1.27 protein.synthesis.ribosomal...</td> <td>0.05</td> <td>Gene family</td> <td><a href="/ecc/graph_pair/612739" data-toggle="tooltip" data-placement="top" title="View ECC pair as graph"><i class="fa fa-eye"></i></a> <a href="/ecc/graph/11855/3/1" data-toggle="tooltip" data-placement="top" title="View ECC as graph"><i class="fa fa-sitemap"></i></a></td> </tr> </tbody> </table> </div> <br> <h3 class="banner-blue" id="annotation">Functional Annotation</h3> <div class="panel with-nav-tabs panel-default"> <div class="panel-heading"> <ul class="nav nav-tabs"> <li class="active"><a href="#tab1default" data-toggle="tab">GO</a></li> <li><a href="#tab2default" data-toggle="tab">Predicted GO</a></li> <li><a href="#tab3default" data-toggle="tab">InterPro</a></li> </ul> </div> <div> <div class="tab-content"> <div class="tab-pane fade in active" id="tab1default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2739" data-toggle="tooltip" data-placement="top" title=""A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs. These actions are described from two distinct but related perspectives: (1) biochemical activity, and (2) role as a component in a larger system/process." [GOC:pdt]">GO:0003674</a></td> <td class="col-xs-6">molecular_function</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/2793" data-toggle="tooltip" data-placement="top" title=""The action of a molecule that contributes to the structural integrity of the ribosome." [GOC:mah]">GO:0003735</a></td> <td class="col-xs-6">structural constituent of ribosome</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">InterProScan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">MF</td> <td class="col-xs-2"><a href="/go/view/4058" data-toggle="tooltip" data-placement="top" title=""The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell." [GOC:mah, GOC:vw]">GO:0005198</a></td> <td class="col-xs-6">structural molecule activity</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4297" data-toggle="tooltip" data-placement="top" title=""A location, relative to cellular compartments and structures, occupied by a macromolecular machine when it carries out a molecular function. There are two ways in which the gene ontology describes locations of gene products: (1) relative to cellular structures (e.g., cytoplasmic side of plasma membrane) or compartments (e.g., mitochondrion), and (2) the stable macromolecular complexes of which they are parts (e.g., the ribosome)." [GOC:pdt, NIF_Subcellular:sao-1337158144]">GO:0005575</a></td> <td class="col-xs-6">cellular_component</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4341" data-toggle="tooltip" data-placement="top" title=""The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [ISBN:0198506732]">GO:0005622</a></td> <td class="col-xs-6">intracellular</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">InterProScan</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/4539" data-toggle="tooltip" data-placement="top" title=""An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins." [ISBN:0198506732]">GO:0005840</a></td> <td class="col-xs-6">ribosome</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">InterProScan</td> </tr> <tr style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5056" data-toggle="tooltip" data-placement="top" title=""The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome." [GOC:go_curators]">GO:0006412</a></td> <td class="col-xs-6">translation</td> <td class="col-xs-1">IEA</td> <td class="col-xs-2">InterProScan</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5146" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another." [CHEBI:16670, GOC:go_curators]">GO:0006518</a></td> <td class="col-xs-6">peptide metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/5417" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving organic or inorganic compounds that contain nitrogen." [CHEBI:51143, GOC:go_curators, GOC:jl, ISBN:0198506732]">GO:0006807</a></td> <td class="col-xs-6">nitrogen compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6287" data-toggle="tooltip" data-placement="top" title=""A biological process represents a specific objective that the organism is genetically programmed to achieve. Biological processes are often described by their outcome or ending state, e.g., the biological process of cell division results in the creation of two daughter cells (a divided cell) from a single parent cell. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence." [GOC:pdt]">GO:0008150</a></td> <td class="col-xs-6">biological_process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/6288" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation." [GOC:go_curators, ISBN:0198547684]">GO:0008152</a></td> <td class="col-xs-6">metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7097" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones." [GOC:curators, ISBN:0198547684]">GO:0009058</a></td> <td class="col-xs-6">biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7098" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah]">GO:0009059</a></td> <td class="col-xs-6">macromolecule biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/7976" data-toggle="tooltip" data-placement="top" title=""Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." [GOC:go_curators, GOC:isa_complete]">GO:0009987</a></td> <td class="col-xs-6">cellular process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/12489" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a protein. Includes protein modification." [GOC:ma]">GO:0019538</a></td> <td class="col-xs-6">protein metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/16436" data-toggle="tooltip" data-placement="top" title=""A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together." [GOC:dos, GOC:mah]">GO:0032991</a></td> <td class="col-xs-6">protein-containing complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/18053" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving various organic and inorganic nitrogenous compounds, as carried out by individual cells." [GOC:mah]">GO:0034641</a></td> <td class="col-xs-6">cellular nitrogen compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/18057" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, carried out by individual cells." [CHEBI:33694, GOC:mah]">GO:0034645</a></td> <td class="col-xs-6">cellular macromolecule biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21317" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide." [CHEBI:16670, GOC:dph, GOC:jl]">GO:0043043</a></td> <td class="col-xs-6">peptide biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21426" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." [CHEBI:33694, GOC:mah]">GO:0043170</a></td> <td class="col-xs-6">macromolecule metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/21476" data-toggle="tooltip" data-placement="top" title=""Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane." [GOC:go_curators]">GO:0043226</a></td> <td class="col-xs-6">organelle</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/21478" data-toggle="tooltip" data-placement="top" title=""Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators]">GO:0043228</a></td> <td class="col-xs-6">non-membrane-bounded organelle</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/21479" data-toggle="tooltip" data-placement="top" title=""Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane." [GOC:go_curators]">GO:0043229</a></td> <td class="col-xs-6">intracellular organelle</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/21482" data-toggle="tooltip" data-placement="top" title=""Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes." [GOC:go_curators]">GO:0043232</a></td> <td class="col-xs-6">intracellular non-membrane-bounded organelle</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21818" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group, as carried out by individual cells." [CHEBI:32988]">GO:0043603</a></td> <td class="col-xs-6">cellular amide metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/21819" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group." [CHEBI:32988]">GO:0043604</a></td> <td class="col-xs-6">amide biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22429" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways by which individual cells transform chemical substances." [GOC:go_curators]">GO:0044237</a></td> <td class="col-xs-6">cellular metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22430" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving those compounds which are formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism." [GOC:go_curators, http://www.metacyc.org]">GO:0044238</a></td> <td class="col-xs-6">primary metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22437" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of substances, carried out by individual cells." [GOC:jl]">GO:0044249</a></td> <td class="col-xs-6">cellular biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22444" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass, as carried out by individual cells." [CHEBI:33694, GOC:mah]">GO:0044260</a></td> <td class="col-xs-6">cellular macromolecule metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22448" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification." [GOC:jl]">GO:0044267</a></td> <td class="col-xs-6">cellular protein metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/22451" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of organic and inorganic nitrogenous compounds." [GOC:jl, ISBN:0198506732]">GO:0044271</a></td> <td class="col-xs-6">cellular nitrogen compound biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22600" data-toggle="tooltip" data-placement="top" title=""Any constituent part of the living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm." [GOC:jl]">GO:0044424</a></td> <td class="col-xs-6">intracellular part</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22619" data-toggle="tooltip" data-placement="top" title=""Any constituent part of the cytoplasm, all of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures." [GOC:jl]">GO:0044444</a></td> <td class="col-xs-6">cytoplasmic part</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/22639" data-toggle="tooltip" data-placement="top" title=""Any constituent part of a cell, the basic structural and functional unit of all organisms." [GOC:jl]">GO:0044464</a></td> <td class="col-xs-6">cell part</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/33410" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving an organic substance, any molecular entity containing carbon." [CHEBI:50860, GOC:mah]">GO:0071704</a></td> <td class="col-xs-6">organic substance metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/40778" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways involving organonitrogen compound." [GOC:pr, GOC:TermGenie]">GO:1901564</a></td> <td class="col-xs-6">organonitrogen compound metabolic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/40780" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of organonitrogen compound." [GOC:pr, GOC:TermGenie]">GO:1901566</a></td> <td class="col-xs-6">organonitrogen compound biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">BP</td> <td class="col-xs-2"><a href="/go/view/40790" data-toggle="tooltip" data-placement="top" title=""The chemical reactions and pathways resulting in the formation of an organic substance, any molecular entity containing carbon." [GOC:pr, GOC:TermGenie]">GO:1901576</a></td> <td class="col-xs-6">organic substance biosynthetic process</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> <tr class="parent_term" style="display: none" style="clear:both;"> <td class="col-xs-1">CC</td> <td class="col-xs-2"><a href="/go/view/45922" data-toggle="tooltip" data-placement="top" title=""A macromolecular complex containing both protein and RNA molecules." [GOC:vesicles]">GO:1990904</a></td> <td class="col-xs-6">ribonucleoprotein complex</td> <td class="col-xs-1">None</td> <td class="col-xs-2">Extended</td> </tr> </tbody> </table> </div> <div class="panel-body"> <a href="#" id="go_toggle">Toggle parental</a> </div> </div> <div class="tab-pane fade" id="tab2default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="predicted_go_table"> <thead> <tr> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Type</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/go" data-target="#helpModal">GO</abbr> Term</th> <th class="col-xs-6" data-sort="string-ins"><span class="sort-icon"></span>Name</th> <th class="col-xs-1" data-sort="string-ins"><span class="sort-icon"></span>Evidence</th> <th class="col-xs-2" data-sort="string-ins"><span class="sort-icon"></span>Source</th> </tr> </thead> <tbody> <tr> <td class="col-xs-12"><p>No Predicted GO terms available for this sequence</p></td> </tr> </tbody> </table> </div> </div> <div class="tab-pane fade" id="tab3default"> <div class="table-responsive"> <table class="table table-striped table-fixed" id="interpro_table"> <thead> <tr> <th class="col-xs-3" data-sort="string-ins"><span class="sort-icon"></span><abbr title="Click to show help" href="/help/interpro_domain" data-target="#helpModal">InterPro domains</abbr></th> <th class="col-xs-5" data-sort="string-ins"><span class="sort-icon"></span>Description</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Start</th> <th class="col-xs-2" data-sort="int"><span class="sort-icon"></span>Stop</th> </tr> </thead> <tbody> <tr> <td class="col-xs-3"><a href="/interpro/view/474">IPR000592</a></td> <td class="col-xs-5">Ribosomal_S27e</td> <td class="col-xs-2">30</td> <td class="col-xs-2">84</td> </tr> </tbody> </table> </div> </div> </div> </div> </div> <div class="row"> <div class="col-lg-12 col-md-12 col-sm-12"> <div class="panel panel-default"> <div class="panel-heading" id="links">External Links</div> <div class="table-responsive"> <table class="table table-striped table-separated"> <tbody> <tr> <td><em>No external refs found!</em></td> </td> </tr> </tbody> </table> </div> </div> </div> </div> <div class="modal" id="profileModal" tabindex="-1" role="dialog" aria-labelledby="profileModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> </div> </div> </div> <footer class="footer" id="footer"> <div class="container"> <div class="row"> <div class="col-xs-2"><strong class="text-muted"><a href="/features" class="text-muted">CoNekT</a></strong></div> <div class="col-xs-2"><a href="/about" class="text-muted">About</a></div> <div class="col-xs-2"><a href="/contact" class="text-muted">Contact</a></div> <div class="col-xs-2"><a href="/disclaimer" class="text-muted">Disclaimer</a></div> <div class="col-xs-2"><a href="/privacy" class="text-muted">Privacy policy</a></div> </div> </div> </footer> <div class="modal" id="helpModal" tabindex="-1" role="dialog" aria-labelledby="helpModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> </div> </div> </div> <div class="modal" id="loaderModal" tabindex="-1" role="dialog" aria-labelledby="loaderModalLabel"> <div class="modal-dialog" role="document" style="width:1000px;height:800px;"> <div class="modal-content"> <div class="modal-body"> <div id="leafy_loader"></div> <p class="text-center text-muted" id="leafy_loader_text">Loading ... please wait ... </p> <p class="text-center" id="leafy_loader_close_btn" style="display:none"><button type="button" class="btn btn-primary" data-dismiss="modal" style>Close</button></p> </div> </div> </div> </div> <script src="/static/js/jquery.min.js"></script> <script src="/static/js/bootstrap.min.js"></script> <script src="/static/js/stupidtable.min.js"></script> <script src="/static/js/TweenMax.min.js"></script> <script src="/static/js/jquery.qtip.min.js"></script> <script src="/static/js/planet_loader.js"></script> <script> function init_qtip() { $('.qtip_tooltip').each(function() { $(this).qtip({ content: { text: function(event, api) { $.ajax({ url: api.elements.target.attr('qtip_href') }) .then(function(content) { // Set the tooltip content upon successful retrieval api.set('content.text', content); 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