1. Home
  2. Species
  3. Alsophila latebrosa
  4. Sequence
  5. Als_g23307

Als_g23307


Description : subunit beta2 of coat protein complex & original description: none


Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g23307

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00142p00013680 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
AT1G79990 No alias structural molecules 0.06 OrthoFinder output from all 47 species
Adi_g015312 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g13025 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Ala_g02602 No alias subunit beta2 of coat protein complex & original... 0.06 OrthoFinder output from all 47 species
Azfi_s0001.g000608 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026263 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020903.33 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Cre02.g118500 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 OrthoFinder output from all 47 species
Dcu_g04083 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Dde_g02366 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
GSVIVT01017121001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.04 OrthoFinder output from all 47 species
Gb_26317 No alias subunit beta2 of coat protein complex 0.05 OrthoFinder output from all 47 species
LOC_Os02g11830.2 LOC_Os02g11830 subunit beta2 of coat protein complex 0.03 OrthoFinder output from all 47 species
LOC_Os02g11840.1 LOC_Os02g11840 subunit beta2 of coat protein complex 0.02 OrthoFinder output from all 47 species
LOC_Os06g05180.3 LOC_Os06g05180 Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica... 0.03 OrthoFinder output from all 47 species
Len_g12266 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Len_g46090 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Lfl_g05710 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
MA_10436968g0010 No alias peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2... 0.03 OrthoFinder output from all 47 species
Mp3g04060.1 No alias subunit beta2 of coat protein complex 0.05 OrthoFinder output from all 47 species
Msp_g01672 No alias subunit beta2 of coat protein complex & original... 0.04 OrthoFinder output from all 47 species
Ore_g10228 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Pir_g14528 No alias subunit beta2 of coat protein complex & original... 0.02 OrthoFinder output from all 47 species
Ppi_g01343 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Solyc03g120270.4.1 Solyc03g120270 subunit beta2 of coat protein complex 0.06 OrthoFinder output from all 47 species
Solyc06g066730.3.1 Solyc06g066730 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species
Solyc12g043000.3.1 Solyc12g043000 subunit beta2 of coat protein complex 0.06 OrthoFinder output from all 47 species
Spa_g10496 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g02168 No alias subunit beta2 of coat protein complex & original... 0.03 OrthoFinder output from all 47 species
Zm00001e014494_P001 Zm00001e014494 subunit beta2 of coat protein complex 0.02 OrthoFinder output from all 47 species
Zm00001e024969_P001 Zm00001e024969 subunit beta2 of coat protein complex 0.04 OrthoFinder output from all 47 species
Zm00001e030001_P002 Zm00001e030001 subunit beta2 of coat protein complex 0.03 OrthoFinder output from all 47 species
Zm00001e036524_P002 Zm00001e036524 subunit beta2 of coat protein complex 0.03 OrthoFinder output from all 47 species
Zm00001e037375_P002 Zm00001e037375 subunit beta2 of coat protein complex 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006486 protein glycosylation IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR006692 Coatomer_WD-assoc_reg 319 762
IPR001680 WD40_repeat 220 256
IPR001680 WD40_repeat 59 85
IPR001680 WD40_repeat 132 171
IPR001680 WD40_repeat 91 127
IPR001680 WD40_repeat 177 215
No external refs found!