Description : SSU processome assembly factor *(UTP6) & original description: none
Gene families : OG0004540 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004540_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Als_g22988 | |
Cluster | HCCA: Cluster_211 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT4G28200 | No alias | FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g025714 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aop_g08502 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.02 | OrthoFinder output from all 47 species | |
Azfi_s2889.g113567 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g07642 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.03 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000571.29 | No alias | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.01 | OrthoFinder output from all 47 species | |
MA_10435952g0010 | No alias | SSU processome assembly factor (UTP6) | 0.03 | OrthoFinder output from all 47 species | |
Mp7g18520.1 | No alias | SSU processome assembly factor (UTP6) | 0.03 | OrthoFinder output from all 47 species | |
Tin_g02822 | No alias | SSU processome assembly factor *(UTP6) & original... | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEA | Interproscan |
MF | GO:0030515 | snoRNA binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000012 | single strand break repair | IEP | HCCA |
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
CC | GO:0005634 | nucleus | IEP | HCCA |
BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0009982 | pseudouridine synthase activity | IEP | HCCA |
MF | GO:0016853 | isomerase activity | IEP | HCCA |
MF | GO:0016866 | intramolecular transferase activity | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
CC | GO:0043227 | membrane-bounded organelle | IEP | HCCA |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR013949 | Utp6 | 9 | 77 |
No external refs found! |