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  5. Als_g22881

Als_g22881 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g22881

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00240750 NFD03, HMGB3,... High mobility group B protein 1 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Adi_g125155 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g06129 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Als_g31169 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059828 NFD03, HMGB3, NFD3 not classified & original description: CDS=1-552 0.02 OrthoFinder output from all 47 species
Cba_g24481 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000073.45 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000655.17 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000984.29 No alias No description available 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021623.8 No alias No description available 0.01 OrthoFinder output from all 47 species
Dde_g04223 HMGB5, NFD5, NFD05, HMGD DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ehy_g31744 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os06g51220.2 NFD2, HMG BETA... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g05824 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
MA_72555g0010 NFD2, HMG BETA... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
MA_75417g0010 NFD2, HMG BETA... HMG1/2-like protein OS=Glycine max (sp|p26585|hmgl_soybn : 88.2) 0.03 OrthoFinder output from all 47 species
Mp8g07450.1 NFD03, HMGB3, NFD3 no hits & (original description: none) 0.05 OrthoFinder output from all 47 species
Ore_g18132 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Pnu_g33244 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0180.g024791 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Sam_g13956 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g38495 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 75 144
No external refs found!