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  5. Als_g22006

Als_g22006


Description : regulatory protein of RNA homeostasis & original description: none


Gene families : OG0000297 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000297_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g22006

Target Alias Description ECC score Gene Family Method Actions
Aev_g10552 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Cba_g06112 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Cba_g07199 ZFN1 regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Dac_g43591 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Ehy_g07764 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
LOC_Os11g28270.1 ZFN1, LOC_Os11g28270 C3H zinc finger transcription factor 0.02 OrthoFinder output from all 47 species
Len_g27838 No alias regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
MA_10435282g0010 No alias C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_137427g0010 ZFN1 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species
MA_557223g0010 ZFN3 C3H zinc finger transcription factor 0.05 OrthoFinder output from all 47 species
Ore_g03223 ZFN1 regulatory protein of RNA homeostasis & original... 0.03 OrthoFinder output from all 47 species
Pnu_g33299 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Spa_g31226 ZFN1 regulatory protein of RNA homeostasis & original... 0.02 OrthoFinder output from all 47 species
Tin_g01856 No alias regulatory protein of RNA homeostasis & original... 0.04 OrthoFinder output from all 47 species
Zm00001e017267_P001 Zm00001e017267 C3H zinc finger transcription factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006082 organic acid metabolic process IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016830 carbon-carbon lyase activity IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 370 394
IPR000571 Znf_CCCH 90 112
IPR000571 Znf_CCCH 43 65
IPR000571 Znf_CCCH 135 160
IPR000571 Znf_CCCH 325 350
No external refs found!