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  5. Pnu_g12169

Pnu_g12169 (ATCPL3, CPL3)


Aliases : ATCPL3, CPL3

Description : subcluster H/CPL3-4 phosphatase & original description: none


Gene families : OG0001184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001184_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g12169

Target Alias Description ECC score Gene Family Method Actions
Cre02.g102950 CPL4 Protein modification.dephosphorylation.aspartate-based... 0.02 OrthoFinder output from all 47 species
Dac_g02270 CPL4 subcluster H/CPL3-4 phosphatase & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g005450.3.1 CPL4, Solyc07g005450 RNA polymerase-II phosphatase. subcluster H/CPL3-4 phosphatase 0.04 OrthoFinder output from all 47 species
Solyc07g005460.4.1 CPL4, Solyc07g005460 RNA polymerase-II phosphatase. subcluster H/CPL3-4 phosphatase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005488 binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004274 FCP1_dom 7 169
No external refs found!