Aliases : UBQ6
Description : component *(eS31) of small ribosomal-subunit (SSU) proteome & original description: none
Gene families : OG0000054 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00017p00094950 | UBQ6,... | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.05 | OrthoFinder output from all 47 species | |
AMTR_s00040p00104050 | evm_27.TU.AmTr_v1... | Ubiquitin-60S ribosomal protein L40 OS=Nicotiana sylvestris | 0.04 | OrthoFinder output from all 47 species | |
AMTR_s00101p00053450 | evm_27.TU.AmTr_v1... | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
AT2G36170 | No alias | Ubiquitin supergroup;Ribosomal protein L40e | 0.08 | OrthoFinder output from all 47 species | |
AT2G47110 | UBQ6 | ubiquitin 6 | 0.08 | OrthoFinder output from all 47 species | |
AT3G52590 | UBQ1, EMB2167,... | ubiquitin extension protein 1 | 0.08 | OrthoFinder output from all 47 species | |
AT3G62250 | UBQ5 | ubiquitin 5 | 0.08 | OrthoFinder output from all 47 species | |
AT5G03240 | UBQ3 | polyubiquitin 3 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g023730 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Adi_g125802 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g22856 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ala_g31252 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g30723 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene54404.t1 | UBQ11, Aspi01Gene54404 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene54416.t1 | UBQ11, Aspi01Gene54416 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Cba_g15004 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cba_g23546 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.08G035500.1 | Ceric.08G035500 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.21G057000.1 | UBQ6, Ceric.21G057000 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.21G057400.1 | UBQ6, Ceric.21G057400 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ceric.27G040600.1 | Ceric.27G040600 | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00022075.50 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.02 | OrthoFinder output from all 47 species | |
Cre06.g273600 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g08496 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g38726 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Dde_g08812 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01022543001 | No alias | Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01028198001 | No alias | Ubiquitin-NEDD8-like protein RUB1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder output from all 47 species | |
GSVIVT01033876001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01038617001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.03 | OrthoFinder output from all 47 species | |
Gb_15027 | UBQ6 | component RPS27a of SSU proteome | 0.04 | OrthoFinder output from all 47 species | |
Gb_30150 | RUB1, ATRUB1, NEDD8 | ubiquitin-fold protein (RUB) | 0.03 | OrthoFinder output from all 47 species | |
Gb_41257 | No alias | component RPL40 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
LOC_Os01g22490.1 | UBQ6, LOC_Os01g22490 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
LOC_Os05g06770.1 | UBQ6, LOC_Os05g06770 | component RPS27a of SSU proteome | 0.05 | OrthoFinder output from all 47 species | |
LOC_Os09g39500.1 | LOC_Os09g39500 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Len_g04120 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Len_g14649 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g16898 | RUB1, ATRUB1, NEDD8 | RUB ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g17565 | No alias | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g26766 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.05 | OrthoFinder output from all 47 species | |
Lfl_g27408 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.08 | OrthoFinder output from all 47 species | |
MA_13101g0020 | No alias | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
MA_529552g0010 | UBQ6 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Mp7g12760.1 | UBQ6 | component RPS27a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Mp8g00780.1 | No alias | component RPL40 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
Msp_g38968 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g13717 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g02121 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g02936 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g02992 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pp3c10_25270V3.1 | Pp3c10_25270 | ubiquitin extension protein 1 | 0.02 | OrthoFinder output from all 47 species | |
Pp3c12_5640V3.1 | UBQ6, Pp3c12_5640 | ubiquitin 6 | 0.03 | OrthoFinder output from all 47 species | |
Pp3c12_5760V3.1 | UBQ6, Pp3c12_5760 | ubiquitin 6 | 0.03 | OrthoFinder output from all 47 species | |
Pp3c20_23170V3.1 | Pp3c20_23170 | ubiquitin extension protein 1 | 0.04 | OrthoFinder output from all 47 species | |
Pp3c4_19000V3.1 | UBQ6, Pp3c4_19000 | ubiquitin 6 | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g25580 | UBQ11 | UBQ ubiquitin-fold protein & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0012.g005542 | UBQ6 | not classified & original description: CDS=139-318 | 0.04 | OrthoFinder output from all 47 species | |
Sam_g07364 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Smo111605 | UBQ6 | Protein biosynthesis.cytosolic ribosome.small subunit... | 0.03 | OrthoFinder output from all 47 species | |
Smo227280 | UBQ10 | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g068045.1.1 | UBQ6, Solyc01g068045 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Solyc03g082570.4.1 | Solyc03g082570 | component RPL40 of LSU proteome component | 0.05 | OrthoFinder output from all 47 species | |
Solyc08g008590.4.1 | Solyc08g008590 | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Solyc08g083120.3.1 | Solyc08g083120 | component RPL40 of LSU proteome component | 0.04 | OrthoFinder output from all 47 species | |
Solyc12g098940.2.1 | UBQ6, Solyc12g098940 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Solyc12g099025.1.1 | UBQ6, Solyc12g099025 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species | |
Spa_g02055 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g29602 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g29603 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.04 | OrthoFinder output from all 47 species | |
Spa_g29979 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g56402 | UBQ6 | component *(eS31) of small ribosomal-subunit (SSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g05310 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g17741 | UBQ11 | UBQ ubiquiTin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g22845 | UBQ11 | UBQ ubiquiTin-fold protein & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g28918 | No alias | component *(eL40) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Zm00001e003606_P001 | UBQ6, Zm00001e003606 | component RPS27a of SSU proteome | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e009474_P001 | Zm00001e009474 | component RPL40 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e026237_P001 | UBQ6, Zm00001e026237 | component RPS27a of SSU proteome | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | HCCA |
MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | HCCA |
BP | GO:0006479 | protein methylation | IEP | HCCA |
BP | GO:0006480 | N-terminal protein amino acid methylation | IEP | HCCA |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | HCCA |
BP | GO:0006749 | glutathione metabolic process | IEP | HCCA |
BP | GO:0006751 | glutathione catabolic process | IEP | HCCA |
BP | GO:0006790 | sulfur compound metabolic process | IEP | HCCA |
MF | GO:0008168 | methyltransferase activity | IEP | HCCA |
BP | GO:0008213 | protein alkylation | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | HCCA |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | HCCA |
MF | GO:0016842 | amidine-lyase activity | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0031365 | N-terminal protein amino acid modification | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0043171 | peptide catabolic process | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
BP | GO:0044273 | sulfur compound catabolic process | IEP | HCCA |
BP | GO:0071705 | nitrogen compound transport | IEP | HCCA |
BP | GO:1901565 | organonitrogen compound catabolic process | IEP | HCCA |
BP | GO:1901575 | organic substance catabolic process | IEP | HCCA |
No external refs found! |