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  5. Als_g18048

Als_g18048


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g18048

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00233950 No alias Pentatricopeptide repeat-containing protein At4g37170... 0.03 OrthoFinder output from all 47 species
AMTR_s00011p00266560 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 OrthoFinder output from all 47 species
AMTR_s00031p00067070 emb1899, EMB175, EMB166 Pentatricopeptide repeat-containing protein At5g03800... 0.03 OrthoFinder output from all 47 species
AMTR_s00049p00210350 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
Adi_g068879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g100991 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g16829 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g31152 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g36178 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18055 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g21628 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g03349 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g76849 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.03G039400.1 Ceric.03G039400 not classified & original description: pacid=50571919... 0.04 OrthoFinder output from all 47 species
Ceric.18G069700.1 CRR2, Ceric.18G069700 not classified & original description: pacid=50622363... 0.04 OrthoFinder output from all 47 species
Ceric.29G060200.1 Ceric.29G060200 not classified & original description: pacid=50624987... 0.04 OrthoFinder output from all 47 species
Ceric.34G063100.1 Ceric.34G063100 not classified & original description: pacid=50623551... 0.04 OrthoFinder output from all 47 species
Dcu_g03759 OSB3 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g14666 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g16806 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g26235 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g38682 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g40898 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g44152 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dcu_g45948 OTP86 not classified & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os09g24640.1 REME1, LOC_Os09g24640 Pentatricopeptide repeat-containing protein At2g36730... 0.03 OrthoFinder output from all 47 species
Len_g40128 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07678 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g07754 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g33322 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g37802 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g21545 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g28017 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10308 EMB2261 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g10800 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g27635 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g32143 No alias ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g13491 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g13575 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04491 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g04996 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g13588 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g18667 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g29286 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g33433 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34646 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g35674 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39170 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Smo72131 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 OrthoFinder output from all 47 species
Spa_g31188 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g08446 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e014549_P001 CRR22, Zm00001e014549 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
InterPro domains Description Start Stop
IPR046848 E_motif 697 742
IPR002885 Pentatricopeptide_repeat 554 579
IPR002885 Pentatricopeptide_repeat 150 172
IPR002885 Pentatricopeptide_repeat 655 679
IPR002885 Pentatricopeptide_repeat 582 612
IPR002885 Pentatricopeptide_repeat 352 368
IPR002885 Pentatricopeptide_repeat 618 643
IPR002885 Pentatricopeptide_repeat 175 222
IPR002885 Pentatricopeptide_repeat 478 526
IPR002885 Pentatricopeptide_repeat 75 122
IPR002885 Pentatricopeptide_repeat 377 425
IPR002885 Pentatricopeptide_repeat 277 323
No external refs found!