AMTR_s00002p00270380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.581

Description : RNA processing.organelle machineries.RNA editing.plastidial RNA editing.OTP86 RNA editing factor


Gene families : OG_01_0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000000 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_03_0000000 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00270380
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 Archaeplastida
AT1G05750 PDE247, CLB19 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT1G26900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT2G41080 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
AT3G09040 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G13770 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT3G21470 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
GSVIVT01011455001 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.02 Archaeplastida
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Gb_17294 No alias RNA editing factor (MEF3) 0.02 Archaeplastida
Gb_24823 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_27462 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_29557 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.03 Archaeplastida
Gb_32439 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.04 Archaeplastida
Gb_35886 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida
Gb_38068 No alias RNA editing factor (OTP82) 0.03 Archaeplastida
LOC_Os01g19380.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os02g06880.1 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 Archaeplastida
LOC_Os03g58100.1 No alias RNA editing factor (OTP85) 0.02 Archaeplastida
LOC_Os05g50460.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
LOC_Os05g50950.1 No alias Pentatricopeptide repeat-containing protein At4g01030,... 0.03 Archaeplastida
LOC_Os06g40860.1 No alias Pentatricopeptide repeat-containing protein At1g03540... 0.03 Archaeplastida
LOC_Os06g49185.1 No alias Pentatricopeptide repeat-containing protein At3g03580... 0.02 Archaeplastida
LOC_Os07g02280.1 No alias RNA editing factor (OTP80) 0.03 Archaeplastida
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os11g14980.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 Archaeplastida
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 Archaeplastida
MA_130735g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.02 Archaeplastida
MA_34492g0020 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 Archaeplastida
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 Archaeplastida
MA_958908g0010 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Pp3c17_5040V3.1 No alias mitochondrial editing factor 22 0.02 Archaeplastida
Smo105729 No alias Pentatricopeptide repeat-containing protein At2g03380,... 0.02 Archaeplastida
Smo21427 No alias Pentatricopeptide repeat-containing protein At2g13600... 0.02 Archaeplastida
Smo61782 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 Archaeplastida
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 Archaeplastida
Smo88824 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.04 Archaeplastida
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 Archaeplastida
Solyc02g080350.1.1 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.02 Archaeplastida
Solyc03g114660.1.1 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.02 Archaeplastida
Solyc04g005460.1.1 No alias Pentatricopeptide repeat-containing protein At2g20540... 0.02 Archaeplastida
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Solyc09g008300.2.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 Archaeplastida
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 Archaeplastida
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e009339_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.02 Archaeplastida
Zm00001e023498_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e036647_P001 No alias Pentatricopeptide repeat-containing protein At5g08510... 0.02 Archaeplastida
Zm00001e037600_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e038629_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
AMTR_s00109p00094190 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g04780,... 0.03 LandPlants
AT2G33680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT3G15130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT3G49142 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT3G49170 EMB2261 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT4G21300 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT4G33170 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT4G39952 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT5G39680 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
GSVIVT01027504001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 LandPlants
GSVIVT01035837001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.02 LandPlants
Gb_02086 No alias RNA editing factor (OTP82) 0.02 LandPlants
Gb_18015 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 LandPlants
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
Gb_40047 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.02 LandPlants
LOC_Os01g19380.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
LOC_Os05g50460.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
LOC_Os07g19400.1 No alias Pentatricopeptide repeat-containing protein At1g71490... 0.02 LandPlants
LOC_Os08g28830.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
LOC_Os11g14980.1 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.02 LandPlants
MA_1109g0010 No alias Pentatricopeptide repeat-containing protein At4g33170... 0.02 LandPlants
MA_16339g0010 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.02 LandPlants
MA_39801g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
MA_79624g0010 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
MA_8491g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 LandPlants
Pp3c5_7610V3.1 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
Smo102603 No alias Pentatricopeptide repeat-containing protein At3g12770... 0.02 LandPlants
Smo130453 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 LandPlants
Smo79052 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.02 LandPlants
Smo99756 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 LandPlants
Solyc01g091610.1.1 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 LandPlants
Solyc02g011680.4.1 No alias Pentatricopeptide repeat-containing protein At5g27110... 0.02 LandPlants
Solyc07g006990.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 LandPlants
Solyc09g090220.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Solyc12g042400.1.1 No alias Pentatricopeptide repeat-containing protein At2g29760,... 0.02 LandPlants
Zm00001e001007_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Zm00001e001918_P001 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 LandPlants
Zm00001e002505_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e009339_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e015358_P001 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 LandPlants
Zm00001e018565_P001 No alias Pentatricopeptide repeat-containing protein At3g13880... 0.02 LandPlants
Zm00001e020583_P001 No alias Pentatricopeptide repeat-containing protein At2g33680... 0.02 LandPlants
Zm00001e030553_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Zm00001e030887_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Zm00001e035764_P001 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.02 LandPlants
Zm00001e038629_P001 No alias no hits & (original description: none) 0.02 LandPlants
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT3G57430 OTP84 Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT5G09950 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
Gb_24633 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.02 SeedPlants
MA_20168g0010 No alias Pentatricopeptide repeat-containing protein At3g26782,... 0.02 SeedPlants
Solyc09g007040.1.1 No alias Pentatricopeptide repeat-containing protein At3g53360,... 0.02 SeedPlants
Solyc09g010070.1.1 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.02 SeedPlants
Zm00001e007133_P001 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 205 230
IPR002885 Pentatricopeptide_repeat 309 334
IPR002885 Pentatricopeptide_repeat 134 156
IPR002885 Pentatricopeptide_repeat 337 363
IPR002885 Pentatricopeptide_repeat 639 668
IPR002885 Pentatricopeptide_repeat 538 567
IPR002885 Pentatricopeptide_repeat 109 130
IPR002885 Pentatricopeptide_repeat 410 436
IPR002885 Pentatricopeptide_repeat 438 468
IPR002885 Pentatricopeptide_repeat 510 536
IPR002885 Pentatricopeptide_repeat 232 280
No external refs found!