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  5. Als_g16558

Als_g16558 (ATINO80, INO80)


Aliases : ATINO80, INO80

Description : ATPase component *(Ino80) of chromatin remodelling complex & original description: none


Gene families : OG0003922 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003922_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g16558

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00053p00190690 ATINO80, INO80,... Chromatin organisation.chromatin remodeling... 0.02 OrthoFinder output from all 47 species
Adi_g107416 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.02 OrthoFinder output from all 47 species
Aop_g19078 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.03 OrthoFinder output from all 47 species
Ceric.02G047900.1 ATINO80, INO80,... ATPase component *(Ino80) of chromatin remodelling... 0.06 OrthoFinder output from all 47 species
Dcu_g11743 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.05 OrthoFinder output from all 47 species
GSVIVT01033231001 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.05 OrthoFinder output from all 47 species
LOC_Os03g22900.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.04 OrthoFinder output from all 47 species
MA_3312g0010 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.03 OrthoFinder output from all 47 species
Mp8g00130.1 ATINO80, INO80 ATPase component Ino80 of chromatin remodelling complex 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0148.g023246 ATINO80, INO80 ATPase component *(Ino80) of chromatin remodelling... 0.02 OrthoFinder output from all 47 species
Smo444050 ATINO80, INO80 Chromatin organisation.chromatin remodeling... 0.04 OrthoFinder output from all 47 species
Solyc04g016370.3.1 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.03 OrthoFinder output from all 47 species
Zm00001e001678_P001 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.04 OrthoFinder output from all 47 species
Zm00001e038194_P002 ATINO80, INO80,... ATPase component Ino80 of chromatin remodelling complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0017069 snRNA binding IEP HCCA
MF GO:0017070 U6 snRNA binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000330 SNF2_N 360 578
IPR020838 DBINO 107 233
No external refs found!