Gb_20425


Description : polynucleotide phosphorylase (PNP)


Gene families : OG_01_0001869 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001869_tree ,
OG_02_0002404 (LandPlants) Phylogenetic Tree(s): OG_02_0002404_tree ,
OG_03_0006667 (SeedPlants) Phylogenetic Tree(s): OG_03_0006667_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_20425
Cluster HCCA: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.06 Archaeplastida
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.1 Archaeplastida
Cpa|evm.model.tig00020603.85 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
Cpa|evm.model.tig00021073.40 No alias RNA processing.organelle machineries.ribonuclease... 0.02 Archaeplastida
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.09 Archaeplastida
MA_10427258g0020 No alias polynucleotide phosphorylase (PNP) 0.05 Archaeplastida
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.07 Archaeplastida
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.06 Archaeplastida
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.07 Archaeplastida
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.05 Archaeplastida
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.09 Archaeplastida
Solyc08g066120.4.1 No alias polynucleotide phosphorylase (PNP) 0.03 Archaeplastida
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.07 Archaeplastida
AMTR_s00004p00095690 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.02 LandPlants
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.05 LandPlants
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.1 LandPlants
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.07 LandPlants
LOC_Os02g40460.1 No alias polynucleotide phosphorylase (PNP) 0.02 LandPlants
MA_10427258g0020 No alias polynucleotide phosphorylase (PNP) 0.05 LandPlants
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.07 LandPlants
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.06 LandPlants
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.07 LandPlants
Smo77425 No alias RNA processing.organelle machineries.ribonuclease... 0.02 LandPlants
Smo84724 No alias RNA processing.organelle machineries.ribonuclease... 0.04 LandPlants
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.08 LandPlants
Solyc08g066120.4.1 No alias polynucleotide phosphorylase (PNP) 0.02 LandPlants
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.06 LandPlants
AMTR_s00113p00140210 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.ribonuclease... 0.05 SeedPlants
AT5G14580 No alias polyribonucleotide nucleotidyltransferase, putative 0.1 SeedPlants
GSVIVT01032436001 No alias RNA processing.organelle machineries.ribonuclease... 0.07 SeedPlants
LOC_Os02g40460.1 No alias polynucleotide phosphorylase (PNP) 0.02 SeedPlants
MA_10427258g0020 No alias polynucleotide phosphorylase (PNP) 0.04 SeedPlants
MA_10432723g0020 No alias polynucleotide phosphorylase (PNP) 0.05 SeedPlants
MA_10434926g0010 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.05 SeedPlants
Solyc02g086600.3.1 No alias polynucleotide phosphorylase (PNP) 0.08 SeedPlants
Zm00001e015113_P001 No alias polynucleotide phosphorylase (PNP) 0.06 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001247 ExoRNase_PH_dom1 104 233
IPR001247 ExoRNase_PH_dom1 414 547
IPR004088 KH_dom_type_1 655 704
IPR015847 ExoRNase_PH_dom2 236 299
IPR015848 PNPase_PH_RNA-bd_bac/org-type 332 410
IPR003029 S1_domain 718 788
No external refs found!