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  5. Als_g14519

Als_g14519


Description : not classified & original description: none


Gene families : OG0005967 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005967_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g14519
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g016371 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g01555 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g10911 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g21865 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G031400.1 Ceric.16G031400 not classified & original description: pacid=50589889... 0.05 OrthoFinder output from all 47 species
Dac_g13515 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g06462 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g20213 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
LOC_Os09g25550.1 LOC_Os09g25550 Pentatricopeptide repeat-containing protein At4g30825,... 0.03 OrthoFinder output from all 47 species
Len_g12313 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.05 OrthoFinder output from all 47 species
Mp1g07710.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 OrthoFinder output from all 47 species
Msp_g14675 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g19610 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g36090 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g16608 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0039.g012097 No alias not classified & original description: CDS=661-1995 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0063.g015623 No alias not classified & original description: CDS=1-2238 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0149.g023267 No alias not classified & original description: CDS=111-2933 0.02 OrthoFinder output from all 47 species
Sam_g13761 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g25071 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g15195 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 313 359
IPR002885 Pentatricopeptide_repeat 685 745
IPR002885 Pentatricopeptide_repeat 861 920
IPR002885 Pentatricopeptide_repeat 452 498
IPR002885 Pentatricopeptide_repeat 942 988
IPR002885 Pentatricopeptide_repeat 805 834
IPR002885 Pentatricopeptide_repeat 425 448
IPR002885 Pentatricopeptide_repeat 632 657
IPR002885 Pentatricopeptide_repeat 387 411
No external refs found!