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  5. Als_g14038

Als_g14038


Description : pre-mRNA splicing factor *(SF1) & original description: none


Gene families : OG0000568 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000568_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g14038

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00180690 evm_27.TU.AmTr_v1... Splicing factor-like protein 1 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g014374 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g057109 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g078788 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g02342 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g13487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g52019 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g18171 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39334.t1 Aspi01Gene39334 pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g01316 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g27472 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g73082 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G060800.1 Ceric.21G060800 pre-mRNA splicing factor *(SF1) & original description:... 0.05 OrthoFinder output from all 47 species
Ceric.28G060200.1 Ceric.28G060200 pre-mRNA splicing factor *(SF1) & original description:... 0.05 OrthoFinder output from all 47 species
Cre09.g386731 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder output from all 47 species
Dac_g07163 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g04018 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g23974 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os08g01070.2 LOC_Os08g01070 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Lfl_g04206 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g04920 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g08487 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
MA_11962g0020 No alias pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species
MA_15045g0010 No alias pre-mRNA splicing factor (SF1) 0.02 OrthoFinder output from all 47 species
MA_8555g0010 No alias no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
Nbi_g05872 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g18845 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g25454 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g04834 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g06586 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g40492 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g18388 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g47007 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g60982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0130.g022017 No alias pre-mRNA splicing factor *(SF1) & original description:... 0.03 OrthoFinder output from all 47 species
Spa_g01640 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g25982 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g07779 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g09957 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g11604 No alias pre-mRNA splicing factor *(SF1) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e008383_P001 Zm00001e008383 pre-mRNA splicing factor (SF1) 0.04 OrthoFinder output from all 47 species
Zm00001e040741_P001 Zm00001e040741 pre-mRNA splicing factor (SF1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0042393 histone binding IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 519 570
IPR000504 RRM_dom 721 790
IPR032570 SF1-HH 396 508
No external refs found!