Als_g13498 (UVH6, ATXPD)

Aliases : UVH6, ATXPD

Description : component *(XPD) of TFIIh basal transcription factor complex & original description: none

Gene families : OG0004711 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004711_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g13498

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00038580	UVH6, ATXPD,...	RNA biosynthesis.RNA polymerase II-dependent...	0.02	OrthoFinder output from all 47 species
Dcu_g07727	UVH6, ATXPD	component *(XPD) of TFIIh basal transcription factor...	0.04	OrthoFinder output from all 47 species
Sam_g13542	No alias	component *(XPD) of TFIIh basal transcription factor...	0.03	OrthoFinder output from all 47 species
Solyc06g008970.4.1	UVH6, ATXPD,...	subunit XPD of multifunctional TFIIh complex. component...	0.03	OrthoFinder output from all 47 species
Zm00001e040409_P001	UVH6, ATXPD,...	subunit XPD of multifunctional TFIIh complex. component...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006913	nucleocytoplasmic transport	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0017056	structural constituent of nuclear pore	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0051169	nuclear transport	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR010614	DEAD_2	70	253
IPR010643	HBB	268	410
IPR006555	ATP-dep_Helicase_C	522	695

External Links

No external refs found!

Als_g13498 (UVH6, ATXPD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation