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  5. Als_g13289

Als_g13289 (EMB976)


Aliases : EMB976

Description : plastidial splicing factor *(PDM4) & original description: none


Gene families : OG0007469 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0007469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g13289

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00048p00132600 EMB976,... Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Adi_g059643 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g07260 No alias plastidial splicing factor *(PDM4) & original description: none 0.07 OrthoFinder output from all 47 species
Cba_g01274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g10450 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10434955g0010 EMB976 Pentatricopeptide repeat-containing protein At5g27270... 0.02 OrthoFinder output from all 47 species
Nbi_g13274 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51412 No alias plastidial splicing factor *(PDM4) & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g01225 EMB976 plastidial splicing factor *(PDM4) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 262 307
IPR002885 Pentatricopeptide_repeat 354 397
IPR002885 Pentatricopeptide_repeat 449 468
IPR002885 Pentatricopeptide_repeat 544 572
IPR002885 Pentatricopeptide_repeat 474 503
IPR002885 Pentatricopeptide_repeat 403 433
IPR002885 Pentatricopeptide_repeat 232 257
IPR002885 Pentatricopeptide_repeat 195 223
No external refs found!