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  5. Pnu_g11589

Pnu_g11589


Description : RING-H2-class BTL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11589
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00119p00089020 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT3G13430 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g066234 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g102739 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aev_g01231 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22643 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g27273 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63212.t1 Aspi01Gene63212 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g37733 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G066200.1 Ceric.16G066200 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Ceric.23G058400.1 Ceric.23G058400 not classified & original description: pacid=50610018... 0.04 OrthoFinder output from all 47 species
Dde_g08256 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g01127 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02398 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os12g02620.1 LOC_Os12g02620 E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum... 0.03 OrthoFinder output from all 47 species
Lfl_g26016 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Nbi_g13707 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g20916 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g36482 ATCRT1 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Sam_g14669 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g29753 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g12871 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g23873 No alias RING-H2-class BTL-subclass E3 ubiquiTin ligase &... 0.03 OrthoFinder output from all 47 species
Zm00001e028905_P001 RHC1A, Zm00001e028905 Probable E3 ubiquitin-protein ligase RHC1A... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 370 411
IPR039525 RNF126-like_zinc-ribbon 25 60
No external refs found!