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  5. Als_g12652

Als_g12652 (AtTLP3, TLP3)


Aliases : AtTLP3, TLP3

Description : TUB-type transcription factor & original description: none


Gene families : OG0000251 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000251_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g12652
Cluster HCCA: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Adi_g003799 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g104657 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g126997 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g15706 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene25766.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene26936.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene38121.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene60507.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene60509.t1 AtTLP3, TLP3,... TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g16860 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.1 OrthoFinder output from all 47 species
Ceric.39G011000.1 AtTLP3, TLP3,... TUB-type transcription factor & original description:... 0.02 OrthoFinder output from all 47 species
Dac_g08196 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g14735 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dac_g22300 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
GSVIVT01017810001 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.03 OrthoFinder output from all 47 species
Gb_06851 AtTLP3, TLP3 transcription factor (TUB) 0.08 OrthoFinder output from all 47 species
Lfl_g10086 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_87289g0010 AtTLP3, TLP3 transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Ore_g42650 AtTLP1, TLP1 TUB-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g15089 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g00926 AtTLP3, TLP3 TUB-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024249 AtTLP3, TLP3 TUB-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Smo85745 AtTLP3, TLP3 RNA biosynthesis.transcriptional activation.TUB... 0.03 OrthoFinder output from all 47 species
Solyc02g085130.4.1 TLP2, AtTLP2,... transcription factor (TUB) 0.02 OrthoFinder output from all 47 species
Solyc07g062390.4.1 AtTLP7, TLP7,... transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Zm00001e028052_P001 AtTLP7, TLP7,... transcription factor (TUB) 0.03 OrthoFinder output from all 47 species
Zm00001e031774_P001 TLP10, AtTLP10,... transcription factor (TUB) 0.04 OrthoFinder output from all 47 species
Zm00001e032131_P001 AtTLP7, TLP7,... transcription factor (TUB) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003909 DNA ligase activity IEP HCCA
MF GO:0003910 DNA ligase (ATP) activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 60 106
IPR000007 Tubby_C 121 416
No external refs found!