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  5. Als_g11741

Als_g11741


Description : not classified & original description: none


Gene families : OG0000613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000613_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g11741

Target Alias Description ECC score Gene Family Method Actions
AT3G15590 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 OrthoFinder output from all 47 species
AT4G21705 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 OrthoFinder output from all 47 species
Adi_g030656 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g057168 No alias RNA editing factor *(POCO) & original description: none 0.05 OrthoFinder output from all 47 species
Ala_g07362 No alias RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Als_g32967 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g33654 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g11231 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g75398 PPR596 RNA editing factor *(POCO) & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g01745 PPR596 RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031246001 No alias Pentatricopeptide repeat-containing protein At4g01990,... 0.03 OrthoFinder output from all 47 species
Gb_14212 No alias RNA editing factor (POCO) 0.02 OrthoFinder output from all 47 species
LOC_Os01g17320.1 PPR596, LOC_Os01g17320 RNA editing factor (POCO) 0.03 OrthoFinder output from all 47 species
LOC_Os01g19490.1 LOC_Os01g19490 Pentatricopeptide repeat-containing protein At4g01990,... 0.02 OrthoFinder output from all 47 species
LOC_Os02g55310.1 LOC_Os02g55310 Pentatricopeptide repeat-containing protein At5g27460... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35730.1 LOC_Os10g35730 Pentatricopeptide repeat-containing protein At4g02820,... 0.03 OrthoFinder output from all 47 species
LOC_Os10g35750.1 LOC_Os10g35750 Pentatricopeptide repeat-containing protein At2g20710,... 0.02 OrthoFinder output from all 47 species
LOC_Os10g35760.2 LOC_Os10g35760 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
MA_29755g0010 No alias Pentatricopeptide repeat-containing protein At1g02150... 0.04 OrthoFinder output from all 47 species
MA_29806g0010 No alias Pentatricopeptide repeat-containing protein At1g60770... 0.03 OrthoFinder output from all 47 species
Pir_g49768 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g29727 No alias RNA editing factor *(POCO) & original description: none 0.03 OrthoFinder output from all 47 species
Solyc07g054090.3.1 Solyc07g054090 Pentatricopeptide repeat-containing protein At2g20710,... 0.03 OrthoFinder output from all 47 species
Tin_g08732 No alias RNA ediTing factor *(POCO) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g37476 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e012594_P001 Zm00001e012594 Pentatricopeptide repeat-containing protein At4g21705,... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 286 312
IPR002885 Pentatricopeptide_repeat 360 384
IPR002885 Pentatricopeptide_repeat 201 257
IPR002885 Pentatricopeptide_repeat 393 438
No external refs found!