Pnu_g11469 (RNA_POL_II_LSRNA_POL_I...)

Aliases : RNA_POL_II_LSRNA_POL_II_LS, NRPB1, RPB1, RNA_POL_II_LS

Description : component *(NRPB1) of RNA polymerase II complex & original description: none

Gene families : OG0003577 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003577_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g11469

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00152770	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.03	OrthoFinder output from all 47 species
AT4G35800	RNA_POL_II_LSRNA_...	RNA polymerase II large subunit	0.02	OrthoFinder output from all 47 species
Aev_g06184	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Aop_g00820	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species
Azfi_s0993.g094765	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
Ehy_g31167	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.04	OrthoFinder output from all 47 species
GSVIVT01008740001	RNA_POL_II_LSRNA_...	RNA biosynthesis.DNA-dependent RNA polymerase (Pol)...	0.04	OrthoFinder output from all 47 species
Lfl_g08690	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.02	OrthoFinder output from all 47 species
Mp4g14340.1	RNA_POL_II_LSRNA_...	subunit 1 of Pol II RNA polymerase	0.03	OrthoFinder output from all 47 species
Ore_g27265	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.05	OrthoFinder output from all 47 species
Solyc02g083350.4.1	RNA_POL_II_LSRNA_...	DNA-directed RNA polymerase II subunit 1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Tin_g05249	RNA_POL_II_LSRNA_...	component *(NRPB1) of RNA polymerase II complex &...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
BP	GO:0006631	fatty acid metabolic process	IEP	HCCA
BP	GO:0006633	fatty acid biosynthetic process	IEP	HCCA
BP	GO:0008610	lipid biosynthetic process	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016790	thiolester hydrolase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	HCCA
BP	GO:0044255	cellular lipid metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007066	RNA_pol_Rpb1_3	527	690
IPR000722	RNA_pol_asu	355	523
IPR007075	RNA_pol_Rpb1_6	894	1078
IPR007073	RNA_pol_Rpb1_7	1163	1296
IPR007080	RNA_pol_Rpb1_1	14	353
IPR000684	RNA_pol_II_repeat_euk	1636	1649
IPR000684	RNA_pol_II_repeat_euk	1629	1642
IPR000684	RNA_pol_II_repeat_euk	1608	1621
IPR000684	RNA_pol_II_repeat_euk	1566	1579
IPR000684	RNA_pol_II_repeat_euk	1580	1593
IPR000684	RNA_pol_II_repeat_euk	1727	1740
IPR000684	RNA_pol_II_repeat_euk	1741	1754
IPR000684	RNA_pol_II_repeat_euk	1559	1572
IPR000684	RNA_pol_II_repeat_euk	1657	1670
IPR000684	RNA_pol_II_repeat_euk	1622	1635
IPR000684	RNA_pol_II_repeat_euk	1601	1614
IPR000684	RNA_pol_II_repeat_euk	1643	1656
IPR000684	RNA_pol_II_repeat_euk	1537	1551
IPR000684	RNA_pol_II_repeat_euk	1825	1834
IPR000684	RNA_pol_II_repeat_euk	1552	1565
IPR000684	RNA_pol_II_repeat_euk	1755	1768
IPR000684	RNA_pol_II_repeat_euk	1594	1607
IPR000684	RNA_pol_II_repeat_euk	1587	1600
IPR000684	RNA_pol_II_repeat_euk	1713	1726
IPR000684	RNA_pol_II_repeat_euk	1615	1628
IPR000684	RNA_pol_II_repeat_euk	1783	1796
IPR000684	RNA_pol_II_repeat_euk	1573	1586
IPR000684	RNA_pol_II_repeat_euk	1685	1698
IPR000684	RNA_pol_II_repeat_euk	1545	1558
IPR000684	RNA_pol_II_repeat_euk	1671	1684
IPR000684	RNA_pol_II_repeat_euk	1811	1824
IPR000684	RNA_pol_II_repeat_euk	1699	1712
IPR007083	RNA_pol_Rpb1_4	719	821
IPR007081	RNA_pol_Rpb1_5	828	1417

External Links

No external refs found!

Pnu_g11469 (RNA_POL_II_LSRNA_POL_I...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation