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  5. Als_g11310

Als_g11310 (SR30, ATSRP30, At-SR30)


Aliases : SR30, ATSRP30, At-SR30

Description : RNA splicing factor *(SR30/34) & original description: none


Gene families : OG0001059 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001059_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g11310
Cluster HCCA: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
Ala_g13919 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g12937 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene37421.t1 At-SR34a, SR34a,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0197.g057374 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: CDS=1-1167 0.03 OrthoFinder output from all 47 species
Azfi_s0241.g059740 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description:... 0.03 OrthoFinder output from all 47 species
Dac_g02742 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01031132001 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Pir_g04480 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g02953 SR30, ATSRP30, At-SR30 RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species
Smo97566 SR30, ATSRP30, At-SR30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
Solyc09g075090.1.1 At-SR34, SRP34,... SR30/34 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Tin_g24685 At-SR34a, SR34a, SRp34a RNA splicing factor *(SR30/34) & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006099 tricarboxylic acid cycle IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 76
IPR000504 RRM_dom 119 181
No external refs found!