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  5. Als_g11010

Als_g11010 (AGL16)


Aliases : AGL16

Description : MADS/AGL-type transcription factor & original description: none


Gene families : OG0000022 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g11010

Target Alias Description ECC score Gene Family Method Actions
AT4G11880 AGL14 AGAMOUS-like 14 0.02 OrthoFinder output from all 47 species
Aev_g49663 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene48068.t2 AGL30, Aspi01Gene48068 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene63673.t1 STK, AGL11,... MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0242.g059800 SOC1, AGL20, ATSOC1 MADS/AGL-type transcription factor & original... 0.04 OrthoFinder output from all 47 species
Dde_g02782 AGL65 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14634 AGL7, AP1 MADS/AGL-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
GSVIVT01037022001 AGL62 RNA biosynthesis.transcriptional activation.MADS box... 0.03 OrthoFinder output from all 47 species
LOC_Os01g10504.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os02g45770.1 AGL6, LOC_Os02g45770 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
LOC_Os05g11380.1 STK, AGL11,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os05g34940.1 PI, LOC_Os05g34940 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
LOC_Os10g39130.1 GL19, AGL19,... transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
LOC_Os12g10540.3 SHP2, AGL5,... transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_10256834g0010 SOC1, AGL20, ATSOC1 transcription factor (MADS/AGL) 0.02 OrthoFinder output from all 47 species
MA_10434397g0010 SHP2, AGL5 transcription factor (MADS/AGL) 0.04 OrthoFinder output from all 47 species
MA_113509g0010 AGL104 transcription factor (MADS/AGL) 0.05 OrthoFinder output from all 47 species
MA_16120g0010 AGL14 transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
MA_1767g0010 AGL66 transcription factor (MADS/AGL) 0.09 OrthoFinder output from all 47 species
Ore_g04651 AGL2, SEP1 MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g12246 AGL30 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Sam_g15459 No alias MADS/AGL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc01g106710.1.1 AGL62, Solyc01g106710 component MED19 of head module of MEDIATOR transcription... 0.02 OrthoFinder output from all 47 species
Solyc07g055920.4.1 SHP2, AGL5,... transcription factor (MADS/AGL) 0.03 OrthoFinder output from all 47 species
Spa_g04680 AGL16 MADS/AGL-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g14680 AGL16 MADS/AGL-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44282 AGL3, SEP4 not classified & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
InterPro domains Description Start Stop
IPR002487 TF_Kbox 155 242
IPR002100 TF_MADSbox 82 129
No external refs found!