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  5. Als_g10524

Als_g10524 (DOC1, ASA1, UMB1,...)


Aliases : DOC1, ASA1, UMB1, LPR1, TIR3, CRM1, BIG

Description : regulatory protein *(BIG) of auxin transport & original description: none


Gene families : OG0002424 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002424_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g10524

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00248360 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.06 OrthoFinder output from all 47 species
AT3G02260 DOC1, ASA1,... auxin transport protein (BIG) 0.05 OrthoFinder output from all 47 species
Adi_g017199 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
Ala_g11928 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.04 OrthoFinder output from all 47 species
Aob_g22705 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0061.g035098 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
Ceric.14G095600.1 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000158.29 No alias No description available 0.01 OrthoFinder output from all 47 species
Dcu_g43763 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.04 OrthoFinder output from all 47 species
Ehy_g05117 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.03 OrthoFinder output from all 47 species
Ehy_g24980 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01036538001 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.06 OrthoFinder output from all 47 species
Gb_03145 DOC1, ASA1,... BIG auxin transport regulator protein 0.03 OrthoFinder output from all 47 species
Len_g28536 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.03 OrthoFinder output from all 47 species
Lfl_g12340 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.05 OrthoFinder output from all 47 species
MA_10425891g0010 DOC1, ASA1,... BIG auxin transport regulator protein 0.03 OrthoFinder output from all 47 species
MA_10436857g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10437010g0030 DOC1, ASA1,... Auxin transport protein BIG OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_141071g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
MA_18467g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Oryza sativa subsp.... 0.02 OrthoFinder output from all 47 species
MA_9930317g0010 DOC1, ASA1,... Auxin transport protein BIG OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp2g04600.1 DOC1, ASA1,... BIG auxin transport regulator protein 0.09 OrthoFinder output from all 47 species
Msp_g24012 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.06 OrthoFinder output from all 47 species
Nbi_g22773 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005167 DOC1, ASA1,... regulatory protein *(BIG) of auxin transport & original... 0.03 OrthoFinder output from all 47 species
Smo141341 DOC1, ASA1,... Phytohormones.auxin.transport.polar auxin transport.BIG... 0.03 OrthoFinder output from all 47 species
Zm00001e033628_P002 DOC1, ASA1,... BIG auxin transport regulator protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR000433 Znf_ZZ 2643 2676
IPR025704 E3_Ub_ligase_UBR4_C 4237 5157
No external refs found!