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  5. Pnu_g11340

Pnu_g11340 (ATGCN5, GCN5)


Aliases : ATGCN5, GCN5

Description : not classified & original description: none


Gene families : OG0003045 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11340
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AT5G64840 ATGCN5, GCN5 general control non-repressible 5 0.04 OrthoFinder output from all 47 species
Aev_g12591 ATGCN5, GCN5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g04195 ATGCN5, GCN5 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g16234 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02291 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0168.g054635 ATGCN5, GCN5 not classified & original description: CDS=239-2245 0.05 OrthoFinder output from all 47 species
Cba_g38272 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.29G008900.1 ATGCN5, GCN5,... not classified & original description: pacid=50624672... 0.08 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.32 ATGCN2, GCN2 ABC transporter F family member 2 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre06.g265100 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cre08.g372250 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g12683 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g07651 ATGCN5, GCN5 not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01022235001 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Gb_01082 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Gb_01083 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os11g39020.1 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Len_g13114 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
MA_10437027g0010 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Mp7g11090.1 ATGCN5, GCN5 ABC transporter F family member 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Msp_g14610 ATGCN5, GCN5 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g09728 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ppi_g15434 ATGCN5, GCN5 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g19383 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc04g051800.3.1 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Spa_g18685 ATGCN5, GCN5 not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g11682 ATGCN5, GCN5 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Zm00001e011297_P001 ATGCN5, GCN5,... ABC transporter F family member 5 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003746 translation elongation factor activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0004602 glutathione peroxidase activity IEP HCCA
BP GO:0006163 purine nucleotide metabolic process IEP HCCA
BP GO:0006414 translational elongation IEP HCCA
BP GO:0006753 nucleoside phosphate metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009117 nucleotide metabolic process IEP HCCA
BP GO:0009150 purine ribonucleotide metabolic process IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:0072521 purine-containing compound metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 572 703
IPR032781 ABC_tran_Xtn 458 545
IPR003439 ABC_transporter-like_ATP-bd 244 419
No external refs found!