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  5. Als_g10256

Als_g10256 (PTB2, ATPTB2)


Aliases : PTB2, ATPTB2

Description : RNA splicing factor *(PTB) & original description: none


Gene families : OG0001527 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001527_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g10256

Target Alias Description ECC score Gene Family Method Actions
Adi_g056332 PTB1, PTB, ATPTB1 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Adi_g060468 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g13990 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.01 OrthoFinder output from all 47 species
Cba_g56769 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G093000.1 PTB2, ATPTB2,... RNA splicing factor *(PTB) & original description:... 0.02 OrthoFinder output from all 47 species
Dcu_g11646 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g38746 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os03g25980.2 PTB1, PTB,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Lfl_g06615 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g18513 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Msp_g09114 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g07274 PTB2, ATPTB2 RNA splicing factor *(PTB) & original description: none 0.04 OrthoFinder output from all 47 species
Solyc02g088110.4.1 PTB1, PTB,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species
Solyc03g007320.4.1 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e020441_P003 PTB2, ATPTB2,... PTB-type RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0004721 phosphoprotein phosphatase activity IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007275 multicellular organism development IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016311 dephosphorylation IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0016791 phosphatase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
CC GO:0030906 retromer, cargo-selective complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034457 Mpp10 complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
MF GO:0042578 phosphoric ester hydrolase activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR021790 PTBP1-like_RRM2 242 320
IPR000504 RRM_dom 22 72
No external refs found!