Als_g09801


Description : associated component *(AFR) of histone deacetylase machineries & original description: none


Gene families : OG0001072 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001072_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g09801

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00143240 evm_27.TU.AmTr_v1... Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
Adi_g002827 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g009990 No alias associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Adi_g016707 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Adi_g042772 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g042773 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Adi_g046047 No alias associated component *(AFR) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Adi_g077025 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Adi_g115577 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Aev_g06518 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aev_g20897 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Aop_g26979 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Cba_g50138 No alias associated component *(AFR) of histone deacetylase... 0.06 OrthoFinder output from all 47 species
Ceric.07G066600.1 Ceric.07G066600 associated component *(AFR) of histone deacetylase... 0.05 OrthoFinder output from all 47 species
Ceric.18G085500.1 Ceric.18G085500 associated component *(AFR) of histone deacetylase... 0.08 OrthoFinder output from all 47 species
Ceric.28G016000.1 Ceric.28G016000 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Ceric.29G039900.1 Ceric.29G039900 associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Dac_g39556 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Dcu_g38581 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Dcu_g47805 No alias associated component *(AFR) of histone deacetylase... 0.02 OrthoFinder output from all 47 species
Ehy_g06059 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
GSVIVT01009650001 No alias Chromatin organisation.histone modifications.histone... 0.03 OrthoFinder output from all 47 species
LOC_Os04g08450.3 LOC_Os04g08450 associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species
LOC_Os10g21460.1 LOC_Os10g21460 associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Len_g14311 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Lfl_g18360 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Mp7g07500.1 No alias associated component SAP30 of histone deacetylase machineries 0.02 OrthoFinder output from all 47 species
Ppi_g30334 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Ppi_g31450 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0019.g007685 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g20047 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Sam_g30194 No alias associated component *(AFR) of histone deacetylase... 0.03 OrthoFinder output from all 47 species
Tin_g10450 No alias associated component *(AFR) of histone deacetylase... 0.04 OrthoFinder output from all 47 species
Zm00001e027006_P001 Zm00001e027006 associated component SAP30 of histone deacetylase machineries 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006269 DNA replication, synthesis of RNA primer IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR025718 SAP30_Sin3-bd 154 207
No external refs found!