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  5. Als_g09620

Als_g09620 (MURE, PDE316, ATMURE)


Aliases : MURE, PDE316, ATMURE

Description : cofactor of plastid-encoded RNA polymerase *(PAP11/MURE) & original description: none


Gene families : OG0004194 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004194_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g09620
Cluster HCCA: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00236210 MURE, PDE316,... RNA biosynthesis.organelle machineries.RNA polymerase... 0.06 OrthoFinder output from all 47 species
AT1G63680 MURE, PDE316, ATMURE acid-amino acid ligases;ligases;ATP binding;ATP binding;ligases 0.04 OrthoFinder output from all 47 species
Als_g27358 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Aob_g05309 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Aop_g11920 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Azfi_s0008.g011499 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.04 OrthoFinder output from all 47 species
Cba_g03909 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Ceric.37G004600.1 MURE, PDE316,... cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.04 OrthoFinder output from all 47 species
GSVIVT01019746001 MURE, PDE316, ATMURE RNA biosynthesis.organelle machineries.RNA polymerase... 0.03 OrthoFinder output from all 47 species
Len_g12297 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Mp6g20740.1 MURE, PDE316, ATMURE PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Sam_g23643 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g51453 No alias cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.02 OrthoFinder output from all 47 species
Solyc08g081170.4.1 MURE, PDE316,... PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species
Tin_g04718 MURE, PDE316, ATMURE cofactor of plastid-encoded RNA polymerase *(PAP11/MURE)... 0.03 OrthoFinder output from all 47 species
Zm00001e037912_P001 MURE, PDE316,... PAP11/MURE cofactor of plastid-encoded RNA polymerase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA Interproscan
MF GO:0016881 acid-amino acid ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR013221 Mur_ligase_cen 410 611
IPR000713 Mur_ligase_N 323 398
IPR004101 Mur_ligase_C 632 715
No external refs found!