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  5. Pnu_g11230

Pnu_g11230


Description : not classified & original description: none


Gene families : OG0003174 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003174_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11230
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00109630 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Aop_g04323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g13721 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Cba_g25109 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g21940 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g00997 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc05g015500.4.1 Solyc05g015500 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Spa_g53527 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e021906_P002 Zm00001e021906 RanBP2-type zinc finger protein At1g67325 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0061630 ubiquitin protein ligase activity IEP HCCA
MF GO:0061659 ubiquitin-like protein ligase activity IEP HCCA
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 21 50
IPR001876 Znf_RanBP2 230 261
IPR001876 Znf_RanBP2 188 218
No external refs found!