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  5. Als_g08745

Als_g08745


Description : regulatory RNA helicase *(RH20/RH30) of virus replication & original description: none


Gene families : OG0000636 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000636_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g08745
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
Als_g18220 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g22206 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g11417 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Aop_g09685 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Azfi_s0022.g016084 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Cba_g09901 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.04 OrthoFinder output from all 47 species
Cba_g10365 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g68173 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.21G038500.1 Ceric.21G038500 regulatory RNA helicase *(RH20/RH30) of virus... 0.02 OrthoFinder output from all 47 species
Ceric.27G030300.1 ATDRH1, DRH1,... not classified & original description: pacid=50605657... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.64 No alias DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Dac_g12501 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g13022 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Ehy_g17995 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g20062 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01017651001 No alias DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
LOC_Os11g46240.1 ATDRH1, DRH1,... DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Lfl_g13618 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.03 OrthoFinder output from all 47 species
Lfl_g39840 ATDRH1, DRH1 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Mp3g07940.1 No alias pre-mRNA splicing regulator (DDX5) 0.04 OrthoFinder output from all 47 species
Msp_g09160 ATDRH1, DRH1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g08678 ATDRH1, DRH1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g19068 No alias regulatory RNA helicase *(RH20/RH30) of virus... 0.05 OrthoFinder output from all 47 species
Pnu_g12189 ATDRH1, DRH1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g29066 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo98552 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder output from all 47 species
Zm00001e005014_P001 Zm00001e005014 DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e016546_P001 Zm00001e016546 pre-mRNA splicing regulator (DDX5) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 358 467
IPR011545 DEAD/DEAH_box_helicase_dom 151 320
No external refs found!