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  5. Pnu_g11099

Pnu_g11099


Description : not classified & original description: none


Gene families : OG0002848 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002848_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g11099

Target Alias Description ECC score Gene Family Method Actions
Ehy_g20640 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
LOC_Os08g01420.1 LOC_Os08g01420 PHD finger protein EHD3 OS=Oryza sativa subsp. japonica... 0.02 OrthoFinder output from all 47 species
Lfl_g13284 No alias component *(IWS1) of SPT6-IWS1 transcription elongation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0034.g011282 ORC1B, ATORC1B, UNE13 not classified & original description: CDS=260-3130 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP HCCA
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0097526 spliceosomal tri-snRNP complex IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001739 Methyl_CpG_DNA-bd 181 232
IPR019787 Znf_PHD-finger 796 841
IPR019787 Znf_PHD-finger 541 586
IPR019787 Znf_PHD-finger 644 688
No external refs found!