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  5. Als_g07746

Als_g07746 (ATRPA70A, RPA1A,...)


Aliases : ATRPA70A, RPA1A, ATRPA1A, RPA70A

Description : component *(RPA1) of RPA presynaptic filament assembly factor complex & original description: none


Gene families : OG0002229 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002229_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g07746
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
Aop_g04511 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Aspi01Gene49949.t1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.06 OrthoFinder output from all 47 species
Ceric.07G018700.1 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.18 No alias Replication protein A 70 kDa DNA-binding subunit E... 0.05 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000823.19 ATRPA70A, RPA1A,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.05 OrthoFinder output from all 47 species
Cre17.g718850 ATRPA70A, RPA1A,... Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.02 OrthoFinder output from all 47 species
Gb_14632 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species
Len_g02411 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
MA_217423g0010 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.05 OrthoFinder output from all 47 species
Nbi_g23756 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Ore_g03583 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g015010 ATRPA70A, RPA1A,... component *(RPA1) of RPA presynaptic filament assembly... 0.03 OrthoFinder output from all 47 species
Solyc05g025590.4.1 ATRPA70A, RPA1A,... component RPA1 of single-stranded-DNA binding RPA... 0.01 OrthoFinder output from all 47 species
Zm00001e029651_P001 Zm00001e029651 component RPA1 of single-stranded-DNA binding RPA... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007034 vacuolar transport IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR007199 Rep_factor-A_N 5 101
IPR013955 Rep_factor-A_C 558 707
IPR004365 NA-bd_OB_tRNA 287 359
IPR001878 Znf_CCHC 826 840
IPR031657 REPA_OB_2 397 501
No external refs found!