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  5. AMTR_s00040p00215000

AMTR_s00040p00215000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.230

Description : DNA damage response.DNA repair mechanisms.base excision repair (BER).bifunctional DNA glycosylase/lyase (ROS1)


Gene families : OG_01_0001102 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001102_tree ,
OG_02_0001721 (LandPlants) Phylogenetic Tree(s): OG_02_0001721_tree ,
OG_03_0001624 (SeedPlants) Phylogenetic Tree(s): OG_03_0001624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00215000
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.06 Archaeplastida
GSVIVT01033777001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 Archaeplastida
LOC_Os02g29380.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.03 Archaeplastida
LOC_Os05g37350.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 Archaeplastida
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 Archaeplastida
Pp3c6_18380V3.1 No alias HhH-GPD base excision DNA repair family protein 0.02 Archaeplastida
Smo182514 No alias Chromatin organisation.DNA methylation.ROS1-mediated DNA... 0.02 Archaeplastida
Solyc11g007580.3.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.02 Archaeplastida
Zm00001e024712_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 Archaeplastida
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.04 LandPlants
GSVIVT01033777001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 LandPlants
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 LandPlants
Pp3c6_18380V3.1 No alias HhH-GPD base excision DNA repair family protein 0.02 LandPlants
Solyc10g083630.2.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 LandPlants
Solyc11g007580.3.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.02 LandPlants
Zm00001e014575_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 LandPlants
Zm00001e024712_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 LandPlants
AT5G04560 DME HhH-GPD base excision DNA repair family protein 0.04 SeedPlants
GSVIVT01033777001 No alias DNA damage response.DNA repair mechanisms.base excision... 0.03 SeedPlants
LOC_Os05g37410.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 SeedPlants
Solyc11g007580.3.1 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.02 SeedPlants
Zm00001e014575_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.02 SeedPlants
Zm00001e024712_P001 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 SeedPlants

Type GO Term Name Evidence Source
BP GO:0006284 base-excision repair IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003265 HhH-GPD_domain 1600 1721
No external refs found!