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  5. Pnu_g10950

Pnu_g10950 (HTA6)


Aliases : HTA6

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g10950

Target Alias Description ECC score Gene Family Method Actions
Aev_g39464 HTA6 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g05288 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g06841 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0154.g053563 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: CDS=1-702 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.01 OrthoFinder output from all 47 species
Dac_g12240 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ehy_g12272 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Gb_07185 GAMMA-H2AX,... histone (H2A) 0.03 OrthoFinder output from all 47 species
Nbi_g09403 HTA7 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g07187 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g64775 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0016197 endosomal transport IEP HCCA
BP GO:0016482 cytosolic transport IEP HCCA
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP HCCA
BP GO:0042147 retrograde transport, endosome to Golgi IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 95 127
IPR007125 Histone_H2A/H2B/H3 13 92
No external refs found!